LOCUS BK004856 4000 bp DNA linear PLN 03-FEB-2006
DEFINITION TPA_exp: Oryza sativa (japonica cultivar-group) growth-regulating
factor 1 (GRF1) gene, complete cds.
ACCESSION BK004856
VERSION BK004856.1
KEYWORDS Third Party Data; TPA; TPA:experimental.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 4000)
AUTHORS Choi,D., Kim,J.H. and Kende,H.
TITLE Whole genome analysis of the OsGRF gene family encoding
plant-specific putative transcription activators in rice (Oryza
sativa L.)
JOURNAL Plant Cell Physiol. 45 (7), 897-904 (2004)
PUBMED 15295073
REFERENCE 2 (bases 1 to 4000)
AUTHORS Choi,D. and Kende,H.
TITLE Direct Submission
JOURNAL Submitted (23-JAN-2004) MSU-DOE Plant Research Laboratory, Michigan
State University, East Lansing, MI 48824, USA
COMMENT THIRD PARTY DATABASE: This TPA record uses data from
DDBJ/EMBL/GenBank entry AP005538.2.
FEATURES Location/Qualifiers
source 1..4000
/organism="Oryza sativa Japonica Group"
/mol_type="genomic DNA"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/chromosome="2"
gene <1709..>3113
/gene="GRF1"
mRNA join(<1709..1931,2028..2990,3106..>3113)
/gene="GRF1"
/product="growth-regulating factor 1"
CDS join(1709..1931,2028..2990,3106..3113)
/gene="GRF1"
/note="putative transcription regulator; OsGRF1"
/codon_start=1
/product="growth-regulating factor 1"
/protein_id="DAA05205.1"
/translation="MMMMSGRPSGGAGGGRYPFTASQWQELEHQALIYKYMASGTPIP
SDLILPLRRSFLLDSALATSPSLAFPPQPSLGWGCFGMGFGRKAEDPEPGRCRRTDGK
KWRCSKEAYPDSKYCEKHMHRGKNRSRKPVEMSLATPPPPSSSATSAASNTSAGVAPT
TTTTSSPAPSYSRPAPHDAAPYQALYGGPYAAATARTPAAAAYHAQVSPFHLQLDTTH
PHPPPSYYSMDHKEYAYGHATKEVHGEHAFFSDGTEREHHHAAAGHGQWQFKQLGMEP
KQSTTPLFPGAGYGHTAASPYAIDLSKEDDDEKERRQQQQQQQQQHCFLLGADLRLEK
PAGHDHAAAAQKPLRHFFDEWPHEKNSKGSWMGLEGETQLSMSIPMAANDLPITTTSR
YHNDD"
BASE COUNT 1049 a 1042 c 849 g 1059 t
ORIGIN
1 aaacgagtcc tgagaatgaa agtgattgac taaaaactat tatggccgag tttagtttca
61 aagttttctt caaacttcca actttttcat cacatcaaaa cttttctaca cacaaacttt
121 caacttttcc gtcacattgt tacaatttca actaaggctg tgtttagttc acaccaaaat
181 tagaagtttg gttgaaatat gaacaatgtg atggaaaagt tggaagttcg tgtgtaggaa
241 agttttgata tgatggaaaa gtcaaaagtt tgaacaatta ttttcgaact aaacacggag
301 taaacttcca attttatcat gaactaaaca caccctatgt gtaaatgtct cactgttaat
361 gagaagtgaa agatctataa atttctatcc ggcctagaaa cagttgaagt aataacatca
421 ctaccttaac taaagatgtt gggttttttt ttaaaaaaaa acacattata aacgtacacc
481 cacctgtaaa catatacact cactttgcat attcggttat attccgacaa tataaatggc
541 aaaacttgaa aggtgccatg catagggaaa aaaactgtca tgctaaacag gaaaatacat
601 acttggtgtc aactacttcg tgggttatta tattttgacg aacgcattag tgttaattca
661 cactataata tatttgttga aatacttttc actaaaaaca ccctaatcgc tgaagcggta
721 aaaaaagatt agatcttatt tggactatag ggctcgtata atatgtttga tatgtcattt
781 taaagtttaa ttaattagat aattaccttc tagtttacaa atgtctagaa cttcaataac
841 atatctggtt catatgatgt cacaataaaa tgccagtccg agtgattttc tttctaaccg
901 tcgtctaagc cgtacatacg taaaatactc catttgtttc taaatatttg acaccgttga
961 ctttttagca catatttgac cgtttgtctt tttcaaaaac ttttgtgaaa tatgtaaaac
1021 tatatgtata catataagta tatttaacaa taaatcaaat gatagaaaaa gaattaataa
1081 ttacttaaat tttttaaata atactaatgg ttaaacgtat ttaaaaaaat cgatggcgtc
1141 aaatatttag aaacggaggg agtatatata agttagactc atgataatcc aactctatac
1201 gttaatattg caattttaaa aggtaaaata tactttttat gcaggactaa ttgactgtat
1261 tgaaagatag ttgatgcatt tacgtagtag tacagtaacg ttttatagaa ttcacattcg
1321 tttaattaaa acccaccgtt tattaattag aaaatgtatt aataaatggc cgaaacctga
1381 tatttttggc aggcaggagc gcatttcgca gtattaccct cgggttttct tctggatccg
1441 gaaacagcct ccggctcgca agtcttaaat gcgcacggac gtcgcttccc accctcaccc
1501 cacccttccc cgcccattac aaaaccccag ccaccgagag ctctcccgct ccactcgccg
1561 cacaccacca ccctcacccc tccccccatc cgcgtgatct cccgagcagc tagagcgcgc
1621 gcccgcggcg cctgtactgc gagaccgctt cgctcgcttc cggtcggtga agaggcggtc
1681 ggtcgcagct gaagtagttg ttgcagagat gatgatgatg agcggtcgcc cgagcggcgg
1741 cgccggcgga ggtcggtacc cgttcacggc gtcgcagtgg caggagctgg agcaccaggc
1801 gctcatctac aagtacatgg cgtccgggac tcccatcccc tccgacctca tcctccccct
1861 ccgccgcagc ttcctcctcg actccgccct cgccacctcc ccttccctcg ccttccctcc
1921 ccaaccttca cgtacgttac acacatcctc ctccacgtac gtacgtacgc gttgttgccg
1981 atgctaacaa agtccatatt gtgattggtg ttttctttgg aatgcagtgg ggtggggttg
2041 ctttggcatg gggtttgggc ggaaggcgga ggacccggag ccagggcgat gccggcgtac
2101 ggacggcaag aagtggcggt gctccaagga ggcgtacccg gactccaagt actgcgagaa
2161 gcacatgcac cgtggcaaga accgttcaag aaagcctgtg gaaatgtcct tggccacgcc
2221 gccgccgccg tcctcctccg ccacctccgc cgcgtcgaac acctccgccg gcgtngcccc
2281 caccaccacc accacctcct ccccggcgcc ctcctacagc cgcccggcgc cgcacgacgc
2341 ggcgccgtac caggcgctct acggcgggcc ctacgccgcg gccaccgcgc gcacccccgc
2401 cgccgcggcg taccacgcgc aggtgagccc gttccacctc cagctcgaca ccacccaccc
2461 gcacccgccg ccgtcctact actccatgga ccacaaggag tacgcgtacg ggcacgccac
2521 caaggaggtg cacggcgagc acgccttctt ctccgatggc accgagaggg agcaccacca
2581 cgccgccgcc gggcacggcc agtggcagtt caagcagctc ggcatggagc ccaagcagag
2641 caccacgcct ctcttcccgg gcgccggcta cggccacacc gcggcgtcgc cgtacgccat
2701 tgatctttca aaagaggacg acgatgagaa agagaggcgg caacagcagc agcagcagca
2761 gcagcagcac tgcttcctcc tgggcgccga cctccgtctg gagaagccgg cgggccacga
2821 ccacgcggcg gcggcgcaga aacctctccg ccacttcttc gacgagtggc cgcatgagaa
2881 gaacagcaag ggctcctgga tggggctcga aggcgagacg cagctgtcca tgtccatccc
2941 catggccgcc aacgacctcc cgatcaccac cacctcccgc taccacaatg gtgcgtagag
3001 tactaacctt cgtctccact gatcagaacc gtttcttgat tcttatggcg agccgtgctg
3061 acgatgatcc aacttgcttc ctgtttggtc ttgtgcaatc tgcagatgat taatctcttg
3121 aagaagccaa gaagtgatca acacgcggaa gaaatcaaca gcttctttca cggcgtgcga
3181 gctgcatgct gatgctccag gatcgatcga tcgatcattg catctccaaa ctaatcacgc
3241 ttcgatcttt caggacttca tcaatgacag gccgaaacct cctacgagtt ctctgatgat
3301 attcttattt ttttcccact tcttttcgtt gagctttttg taatgttgct tcgagtgtta
3361 ctcctacatt ttctccgaaa tggcctcaga atgatgcggt cgggctgatt aattaggtta
3421 gactcttcct gaaccaacta ggaatagatt ttctgcctgg ttcctgtcag tccttgtaat
3481 atctgcagca gcttgtgaga caagcgtgtt cgcttttgtg aacgcccttt ttcttctttc
3541 cgattcctct gcctgtgata gtactcgctc cgaaaaaaaa aaaaaaagca aaccgtggat
3601 tcttgggtca acgtgtccgt tttatattgt ccgttttata tgaaattttt ttataattaa
3661 aatttctatt gttgttagat gataaaacat gattaatatg tgacttattt tttttatata
3721 ttttttttaa ataagacgga cggtcgacac ggtttttttt ttttttaaga aggagggagt
3781 aagtcacatc tctggattct gctgaaaagc tcactagcgc catcctgctt cagagaatac
3841 tttatgcttt ctgacaagtc ggtgtaggag tagtagtatt gctaggtgta ctccactccc
3901 ctccttaagt acattaccag tgcaacgtaa aacagctttg ctcctgagca acggaaatgc
3961 ttaataccgt actcttgcac ttcgtcagtt ggttgagtac
//