LOCUS BG088534 677 bp mRNA linear EST 12-MAY-2010 DEFINITION H3154C10-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3154C10 5', mRNA sequence. ACCESSION BG088534 VERSION BG088534.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 677) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG088534.1. Other_ESTs: H3154C10-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3154 row: C column: 10 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..677 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3154C10-5" /db_xref="taxon:10090" /clone="H3154C10" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 169 a 149 c 125 g 234 t ORIGIN 1 atttaatttg atggtaaata aaacattttc tgatgggggt attcactagt atagttaact 61 aatcaaagat tcattggtta ttcagaaaac taaagactgt tgaattagtg gcatgttttg 121 tctatggtac aattgaaaac aaaagcaaat tcttggactg ctttttcaga ggactcgttt 181 agttagtgta acaccaagat tctttgcatg tttttctttc tccaagcaca gcacctatag 241 tacttcagat gaattgaaag ctcagggtag cagtgaaagt gccccaacat aaggtcataa 301 actcacttaa cctttgagtt ggtttgcagt cttttttgta gacattgtaa gtgacaacat 361 cagtctgcaa tgccaagggt tggacatggc tgctctgggg agtaagacat ttgaaacttg 421 attctagtat taaatttgga cttgtgcccc acccccgctt ctcttctgcc tcctctccct 481 tctgtctttc tcctcctcta ctccattctc cccccttctc ctttttttga gccctgattt 541 tatctggatc aactttgggc catgcccatc acactaaggt ctgtggctgc agcggtcctg 601 ggccctgtac ttctctttca cctgcttttt aaaaaccctg tcgttataac tcttttgagt 661 ttgtacaaga tatcaag //