LOCUS BG087059 581 bp mRNA linear EST 12-MAY-2010 DEFINITION H3135A08-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3135A08 5', mRNA sequence. ACCESSION BG087059 VERSION BG087059.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 581) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG087059.1. Other_ESTs: H3135A08-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3135 row: A column: 08 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..581 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3135A08-5" /db_xref="taxon:10090" /clone="H3135A08" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 139 a 128 c 136 g 178 t ORIGIN 1 gaagaggcaa ggcttgcatc cacttcaggg tccctactga ggagagtgag cggtccgagc 61 tgaatatggt gtttaaccta agtttagtat ttaatgaatt ctagaagcct ggctgtgggt 121 ggtgatttgg tcagcatatc ttaggtatat aataactttg aagccataac tttttaactg 181 gagtggttta ttttaattca gtttatttta ttttattttg gggggagggt caggatttta 241 actttaatat tgttaagttt tgtaaaagga gaaccatctc tgtgacaatt acctcttagt 301 ctgtttgttt ttaaagaaat ccctaaaaca aacaaaacac aaaaattctc cagactcaaa 361 cgcacatagt tcagtcactg gaaacgcttg tctttgcacc tgagcctgat cccgctgagc 421 agtgagggct gcttttcccc atgggggctt gctgtctcgt actccctgca ccctcggccc 481 catcccgtga gcacctcggc cctctgcaca ttgcccggct ggttggaccc tttccagata 541 cttgctcagc aaatgtgggc tgcgagcctg ctgagcgctg g //