LOCUS BG085310 592 bp mRNA linear EST 12-MAY-2010 DEFINITION H3111F05-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3111F05 5', mRNA sequence. ACCESSION BG085310 VERSION BG085310.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 592) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG085310.1. Other_ESTs: H3111F05-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3111 row: F column: 05 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..592 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3111F05-5" /db_xref="taxon:10090" /clone="H3111F05" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 137 a 165 c 165 g 125 t ORIGIN 1 gggccatcta gatgtcaccg ctttcttctt acgaagaaaa tgaacagacc tctcaaaaac 61 aactctctcc cagactaaca gaaatgatag cgttgattcg gtagcgacac ggcgtgggag 121 gcaaaataga gtccgcacct cgccgaactc gtaaacaaac ttaggccggg gatctattta 181 gcaaggtaag ggcggagcga caaaaatcgc gctgggatca accgcagctg cgcacattgt 241 atttccgtct ccctcccccc ccgcccccca ggactccgca gtacaagctg tcatggcggc 301 ccgactgtta agcttgtatg gtcgctgcct gtcagcagcg ggggcgatga gagggctccc 361 ggctgctcgc gttcgctggg agtcctccag ggctgtaatc gccccatccg gtgtggagaa 421 aaagcggcaa cgagaaccgg ccatgcagtg gcaggaggac ccagaacccg aggacgaaaa 481 cgtctacgcg aagaaccctg actttcatgg ttatgatagt gaccctgtgg tggacgtctg 541 gaatatgcga gctgtcttct tctttggttt ttccatcgtc ctggtctttg gg //