LOCUS BG085039 693 bp mRNA linear EST 12-MAY-2010 DEFINITION H3107H11-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3107H11 5', mRNA sequence. ACCESSION BG085039 VERSION BG085039.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 693) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG085039.1. Other_ESTs: H3107H11-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3107 row: H column: 11 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..693 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3107H11-5" /db_xref="taxon:10090" /clone="H3107H11" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 192 a 182 c 133 g 186 t ORIGIN 1 accgaatctc cgtgtcagga gccctgaagt tgggattggg tctgcaagtc aatcagacgc 61 tgcggattct tattgatatc caagtaagca gagaatgtga ggacctcgct agctccatga 121 gtgaaattct tccaggactc tgtataaagc gttatacttc tagaagaaaa gactggccac 181 aagcctctac accatcccag ccagcatctg caccaagtga ctctggtctc taatatgcta 241 ctttaacatt cacagtgctg gccatttaat acacaacatg tgtatcttcc tttctgctct 301 ctggcatctt ccataatctg gcttcatttg ctgtggttca ttcattcaac caaaaagctg 361 cccatgaaca acactgaaca caaggtccat gacattcttg tcatccagat cttcatgttc 421 tggtgactca gttcaacaaa acataaagga gatatgcaaa tggatctccc aagctctctt 481 gcaagaagac agtcataact cattggaagg caactgatca ttacattctg aattataaaa 541 tcacccatgt gcttctggtt tccatctgtg ccccagagct gactctgtgc catagctctc 601 catacccaaa tcccgctggg agagagctgg tctcccagga gtgctgacac acctgagagc 661 ataggtgaaa ccaccacttc tgctcaaatt cct //