LOCUS BG084994 680 bp mRNA linear EST 12-MAY-2010 DEFINITION H3107D08-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3107D08 5', mRNA sequence. ACCESSION BG084994 VERSION BG084994.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 680) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG084994.1. Other_ESTs: H3107D08-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3107 row: D column: 08 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..680 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3107D08-5" /db_xref="taxon:10090" /clone="H3107D08" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 185 a 205 c 172 g 118 t ORIGIN 1 catagtccga ccccagactg cccttccaga ggtcaggggc cctagaccaa tcccagacga 61 tgcccccaag ccagcgagcc acccctcgca gaagcagtct cgagttgaag ttactgcatt 121 cagctttgtc tgggcgaaag gaggcgtggt ctctgatggg gagaaacacc cacactaggg 181 aagctaactc tcgcctccaa gggagctcac cagagaggtg caaggacggg gcgcaaaagg 241 atggatggct tggaggcagc cgttcgtggc gttattggta agggataagc cggtagctag 301 ccgaccagcg caggattcta cttcgcttgg cccggcatca cctcgcctta cgtatgtaca 361 ggccatcgtc tcagtcgcag acaatgcagt cggggtactg ccaactccat caagctttca 421 gctgcttcaa gatcccttac aggatggaaa ttaaggccca accctgccct catatctagc 481 cccgtcttgt ccagtctcac acacacacac acacacacac acacacacac acacacacac 541 acacacacac agataagtca gggccaacac aacgagtaga gccacaccgg actagagcaa 601 tgggtggcag gaggtacaga gaggcaagca ctcagcttac cagaagactc acacatattt 661 gttcgtagag caaggttcag //