LOCUS BG083148 671 bp mRNA linear EST 12-MAY-2010 DEFINITION H3085A06-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3085A06 5', mRNA sequence. ACCESSION BG083148 VERSION BG083148.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 671) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG083148.1. Other_ESTs: H3085A06-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3085 row: A column: 06 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..671 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3085A06-5" /db_xref="taxon:10090" /clone="H3085A06" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 176 a 154 c 129 g 212 t ORIGIN 1 gaccagtgag tcggacgacg gctttccacc ccggccagca gctgcggctc ctcctcatca 61 ccatgaagat gaggaagacg aagagcttga ggaagtagca ggtgacccca ttgttatggt 121 ggctggctgt ccattttcct tcagtgaagt tagccagcgg ccagagctgg tagcccagat 181 gacaccagaa gagaaggaag catacatagc cataagtcag cgcgtttttc gggatctctt 241 tgagtgagct ttccctgctt tttcctgccg ttagcccatt tcagagagaa acttcccatc 301 aagtgcttta agggccttcc cacctcttta tgtaaagcac ctgttaatct aatacagacg 361 catagtaaga gaaaatttga tttaatttta tttatttatt tatttttact gtaaggaaca 421 tcccagaaag gtaggaaggt tatattcagt tcccttttat tactaaagta ttaatatctt 481 tctctatttc cttatctatt tttttccttt cccttttaag acatattttt ctcactctga 541 ctaaaatgtt cctgtctctt cagaacccta ctttggatta aacatttcct agtcttgtag 601 ctgcactgtg gtcaggcatt tgagacaatt ccttatattc ctgtcaacca aagcagctaa 661 ccaagaaaca g //