LOCUS BG083087 590 bp mRNA linear EST 12-MAY-2010 DEFINITION H3084D04-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3084D04 5', mRNA sequence. ACCESSION BG083087 VERSION BG083087.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 590) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG083087.1. Other_ESTs: H3084D04-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3084 row: D column: 04 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..590 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3084D04-5" /db_xref="taxon:10090" /clone="H3084D04" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 159 a 142 c 107 g 182 t ORIGIN 1 cgactatccc acggagctcc ttccataaag gctcttccaa gccaagagac agagccctaa 61 caaaaaaatc caattgctta taaaaagagg tttctagctc cactcctatt ggtaggctgg 121 accttgttac tatgtgctct ggtagctcaa ggctgcccat ctgactctcc ctcgggtcat 181 aaagcaaaga ccacaagacc cctcccaagc acctacccta aaataggcag gaactttcca 241 tttttagcat tcttatctaa agaggctctg agagacacac ccaaactgca tctttccagg 301 acccaactaa ctgcatggga gaaatgcagt atctatttaa gcttgtatat tttgttaaca 361 atctggtttt ctatgtacat taatcaaata gcttgtaaca aatccattgt cacacgatgc 421 tctagttttt gtttcatgta gttacattag agttagttta tttggttttg ttttgttttg 481 gggttttttt tgtttgtttg ttttggctat gcctgagatg aaaaccagac ccccaggcat 541 tctggtcaac actttagcac tgagcagcac cctcaggcct cactccatag //