LOCUS BG082628 672 bp mRNA linear EST 12-MAY-2010
DEFINITION H3078C10-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone
H3078C10 5', mRNA sequence.
ACCESSION BG082628
VERSION BG082628.2
DBLINK BioSample: SAMN00163148
KEYWORDS EST.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 672)
AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X.,
Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H.,
Wood,W.H. III, Becker,K.G. and Ko,M.S.H.
TITLE Genome-wide expression profiling of mid-gestation placenta and
embryo using a 15,000 mouse developmental cDNA microarray
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000)
PUBMED 10922068
COMMENT On Jan 26, 2001 this sequence version replaced BG082628.1.
Other_ESTs: H3078C10-3
Contact: George J. Kargul
Laboratory of Genetics
National Institute on Aging/National Institutes of Health
333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA
Email: cdna@lgsun.grc.nia.nih.gov
This clone set has been freely distributed to the community. Please
visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details.
Plate: H3078 row: C column: 10
Seq primer: -21M13 Reverse
POLYA=No.
FEATURES Location/Qualifiers
source 1..672
/organism="Mus musculus"
/mol_type="mRNA"
/strain="C57BL/6J"
/db_xref="niaEST:H3078C10-5"
/db_xref="taxon:10090"
/clone="H3078C10"
/sex="clones arrayed from a variety of cdna libraries"
/clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set"
/dev_stage="Clones arrayed from a variety of cDNA
libraries"
/lab_host="DH10B"
/note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This
clone is among a rearrayed set of 15,247 clones from 11
embryo cDNA libraries (including preimplantation stage
embryos from unfertilized egg to blastocyst, embryonic
part of E7.5 embryos, extraembryonic part of E7.5 embryos,
and E12.5 female mesonephros/gonad) and one newborn ovary
cDNA library. Average insert size 1.5 kb. All source
libraries are cloned unidirectionally with Oligo(dT)-Not
primers. References include: (1) Genome-wide expression
profiling of mid-gestation placenta and embryo using a
15,000 mouse developmental cDNA microarray, 2000, Proc.
Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale
cDNA analysis reveals phased gene expression patterns
during preimplantation mouse develolpment, 2000,
Development, 127: 1737-1749; (3) Genome-wide mapping of
unselected transcripts from extraembryonic tissue of
7.5-day mouse embryos reveals enrichment in the t-complex
and under-representation on the X chromosome, 1998, Hum
Mol Genet 7: 1967-1978."
BASE COUNT 175 a 141 c 164 g 192 t
ORIGIN
1 cttggacttc cattcacagc tgcgactgaa caattgttgg gaattgggct gccgactgta
61 agtaatcaat aaattccttt actatctaga gactatccat aagttctgtg actctagaga
121 accctgacta atacacccgc catgatgaca atggactaaa gctctgaaac tgtaagccag
181 actcaattac atgattgtct tataagtatt gccttggaca tggtgagtaa caggtctgct
241 aaaaattatg tctctccaac cacgcctagt tgcttctgga tggcttatga cttactgatt
301 gtctctgggg tttaccattg actcagggtg taattaagcc agaaggtact tctctctgag
361 tatctgactt gaaagatgag aggagtccca gagggtgaga ggagactgct ttcagccatc
421 tgagagcctg atgtgacaag gatgtggatg ctcaggttgc agcagcctgt gagagcccct
481 tcagcatcct ggggtaccac acacagattt atctgtcagt gggagtgttt gtgtccccaa
541 atctgtatgt gcacaccggc atctgtgtgt atgtgccctg tcaaatgagt gaaggaattg
601 caggcatgtg ataccatggc tagaggatct gtgtcgttat cttattgact tcaaattcag
661 catcagggta ag
//