LOCUS BG072839 548 bp mRNA linear EST 12-MAY-2010 DEFINITION H3115E09-3 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3115E09 3', mRNA sequence. ACCESSION BG072839 VERSION BG072839.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 548) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG072839.1. Other_ESTs: H3115E09-5 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3115 row: E column: 09 Seq primer: -21M13 Forward POLYA=Yes. FEATURES Location/Qualifiers source 1..548 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3115E09-3" /db_xref="taxon:10090" /clone="H3115E09" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 122 a 127 c 150 g 149 t ORIGIN 1 gtgagtacag ccagagcaat ttttaatttg cttaatgata accttgattt agagatttgt 61 ctcaaagtaa gtgttcctgt agtagacatg ttgacaaggt gacgtgctgg cagctctcat 121 tcaggaggag tagaacctga gaagcaaaca ccacgctttc tgaacagcca catcacggaa 181 gtgcttgcgg gagatgggga ggggctgtta ggtgcatagc cctcccctca gtggtaactc 241 tgtagaagtg tcaccgaggg gctcctcttg ggtctggata aacggtccga aaggttaagt 301 ttactctcgg ttgtctggag tggtattcct tgggcactcg gtgctgccag tcggcttgtg 361 tggctccttc catgattagc aaggtcccgt gatccaatgg tatcttcact ctctccacat 421 atgtatagtc tccattttct tcaggtgggg gcttcttcct catctcaaaa gtccgagtgg 481 caccaaaact gagggaagca atgacggggc agctccccag ggatggttca tcgtcgctgt 541 gccagtcc //