LOCUS BG070627 633 bp mRNA linear EST 12-MAY-2010 DEFINITION H3089D06-3 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3089D06 3', mRNA sequence. ACCESSION BG070627 VERSION BG070627.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 633) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG070627.1. Other_ESTs: H3089D06-5 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3089 row: D column: 06 Seq primer: -21M13 Forward POLYA=Yes. FEATURES Location/Qualifiers source 1..633 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3089D06-3" /db_xref="taxon:10090" /clone="H3089D06" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 219 a 106 c 130 g 178 t ORIGIN 1 gcgtaactgt taaacaattt tattgtgcag atttgaaatc tttataggac atgcagcata 61 aagaagtgta aaatatatca gtaagcatat aaaatttcag taaccttttg gatcagcaat 121 tgacttgtat aaaactgagt atctagggag aacagacatg tcttggaaca cacagtttac 181 agactgaatt gtagaatcat ttcccaagtg attctcctta tataaagata aagaatatct 241 ctacatgtaa aaaggtatac agtctagtac actttcagtt atgtgcacag tttaaaattc 301 aaactgtggc catgccagtg tctgttttaa atgcaaacaa tcaaagtagg tagcaggttg 361 gtaaagtgtc ggcaagactg aaggagaaaa caagtcaagc agggttccaa tacatgtatg 421 aaagtgaaaa tgaaagccta tctggaattt taaaaatatc cccaagggca gagctgtaat 481 gtgagctggg aagtaaaagg cttttgggtg tcccaggcag gcagctttct ggagactcag 541 gtacacaggt gaaattcctc agtttgggtt cagaaaaact tgaatttatt acagcaagaa 601 cattacctca agcttttgtt accacccttc ccc //