LOCUS BG069828 663 bp mRNA linear EST 12-MAY-2010 DEFINITION H3080E11-3 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3080E11 3', mRNA sequence. ACCESSION BG069828 VERSION BG069828.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 663) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG069828.1. Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3080 row: E column: 11 Seq primer: -21M13 Forward POLYA=Yes. FEATURES Location/Qualifiers source 1..663 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3080E11-3" /db_xref="taxon:10090" /clone="H3080E11" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 243 a 105 c 114 g 201 t ORIGIN 1 aacagtggga aaatatactt ttatttactt tgttgagtca gaagattgta aaaaaaaatt 61 attgctaaag tagataccaa gcaaaacaga aaggtacttt agaagtccag ttaccttgga 121 gtttatttaa actaaagaaa aggtcatgtt ttcatgcaat acatacttgg ttctttaaat 181 aacaattgtg acaaacagca gaaagaatta gagaatgctg cacttgtgat ccatacaaaa 241 catcaacatt ttgggttgta cataattaaa gaaacatctc acttttcgaa atactgtaat 301 agccaatata tagaggcatg cctttatgtg ggcataggaa tgcaatttag aaaagaaaag 361 aaaaacaaaa caaaacaaaa tcacacggga gctagtcaat ttctttaaaa tcactgagca 421 agaaaagcaa cattgaactt ccatactgat tttatgcagc ttctatacag taccttgact 481 taactccaag agcaaagtta agagtctcct tcactatttt tggtaaacaa ttgcatggta 541 aacttagatg acgttccctc tggattttac ctgggagtgg cctttttaat acttatttaa 601 aagagggcag gtttggcact tttatactga tgtcaccaat gttaatattt cttgggatct 661 cag //