LOCUS BC144652 1780 bp mRNA linear HUM 18-MAR-2009
DEFINITION Homo sapiens C-type lectin domain family 4, member F, mRNA (cDNA
clone MGC:178200 IMAGE:9053183), complete cds.
ACCESSION BC144652
VERSION BC144652.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1780)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1780)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (12-JUN-2007) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Mike Brownstein, NIMH
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCB Plate: 18 Row: N Column: 11.
FEATURES Location/Qualifiers
source 1..1780
/db_xref="H-InvDB:HIT000503051"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:178200 IMAGE:9053183"
/tissue_type="Brain, cerebellum, PCR rescued clones"
/clone_lib="NIH_MGC_311"
/note="Vector: pCR4-TOPO with reversed insert; Clone
identification sequence tag: CTTGGGCC"
gene 1..1780
/gene="CLEC4F"
/gene_synonym="KCLR"
/db_xref="GeneID:165530"
/db_xref="HGNC:HGNC:25357"
CDS 32..1705
/gene="CLEC4F"
/gene_synonym="KCLR"
/codon_start=1
/product="CLEC4F protein"
/protein_id="AAI44653.1"
/db_xref="GeneID:165530"
/db_xref="HGNC:HGNC:25357"
/translation="MDGEAVRFCTDNQCVSLHPQEVDSVAMAPAAPKIPRLVQATPAF
MAVTLVFSLVTLFVVVQQQTRPVPKPVQAVILGDNITGHLPFEPNNHHHFGREAEMRE
LIQTFKGHMENSSAWVVEIQMLKCRVDNVNSQLQVLGDHLGNTNADIQMVKGVLKDAT
TLSLQTQMLRSSLEGTNAEIQRLKEDLEKADALTFQTLNFLKSSLENTSIELHVLSRG
LENANSEIQMLNASLETANTQAQLANSSLKNANAEIYVLRGHLDSVNDLRTQNQVLRN
SLEGANAEIQGLKENLQNTNALNSQTQAFIKSSFDNTSAEIQFLRGHLERAGDEIHVL
KRDLKMVTAQTQKANGRLDQTDTQIQVFKSEMENVNTLNAQIQVLNGHMKNASREIQT
LKQGMKNASALTSQTQMLDSNLQKASAEIQRLRGDLENTKALTMEIQQEQSRLKTLHV
VITSQEQLQRTQSQLLQMVLQGWKFNGGSLYYFSSVKKSWHEAEQFCVSQGAHLASVA
SKEEQAFLVEFTSKVYYWIGLTDRGTEGSWRWTDGTPFNAAQNKAATRG"
BASE COUNT 538 a 402 c 451 g 389 t
ORIGIN
1 ggagcagtgc tggaggatca aggaagcaga gatggacggt gaggcagtcc gcttctgcac
61 agataaccag tgtgtctccc tgcaccccca agaggtggac tctgtggcaa tggctcctgc
121 agcccccaag ataccgaggc tcgttcaggc taccccggca tttatggctg tgaccttggt
181 cttctctctt gtgactctct ttgtagtggt tcaacagcag acaagacctg ttccgaagcc
241 tgtgcaagcc gtaattctgg gagacaacat tactgggcat ttaccttttg aacccaacaa
301 tcatcaccac tttggcaggg aggcagaaat gcgagagctt atccagacat ttaaaggcca
361 catggagaat tccagtgcct gggtagtaga aatccagatg ttgaagtgca gagtggacaa
421 tgtcaattcg cagctccagg tgctcggtga tcatctggga aacaccaatg ctgacatcca
481 gatggtaaaa ggagttctaa aggatgccac tacattgagt ttgcagacac agatgttaag
541 gagttccctg gagggaacca atgctgagat ccagaggctc aaggaagacc ttgaaaaggc
601 agatgcttta actttccaga cgctgaattt cttaaaaagc agtttagaaa acaccagcat
661 tgagctccac gtgctaagca gaggcttaga aaatgcaaac tctgaaattc agatgttgaa
721 tgccagtttg gaaacggcaa atacccaggc tcagttagcc aatagcagtt taaagaacgc
781 taatgctgag atctatgttt tgagaggcca tctagatagt gtcaatgact tgaggaccca
841 gaaccaggtt ttaagaaata gtttggaagg agccaatgct gagatccagg gactaaagga
901 aaatttgcag aacacaaatg ctttaaactc ccagacccag gcctttataa aaagcagttt
961 tgacaacact agtgctgaga tccagttctt aagaggtcat ttggaaagag ctggtgatga
1021 aattcacgtg ttaaaaaggg atttgaaaat ggtcacagcc cagacccaaa aagcaaatgg
1081 ccgtctggac cagacagata ctcagattca ggtattcaag tcagagatgg aaaatgtgaa
1141 taccttaaat gcccagattc aggtcttaaa tggtcatatg aaaaatgcca gcagagagat
1201 acagacccta aaacaaggaa tgaagaatgc ttcagcctta acttcccaga cccagatgtt
1261 agacagcaat ctgcagaagg ccagtgccga gatccagagg ttaagagggg atctagagaa
1321 caccaaagct ctaaccatgg aaatccagca ggagcagagt cgcctgaaga ccctccatgt
1381 ggtcattact tcacaggaac agctacaaag aacccaaagt cagcttctcc agatggtcct
1441 gcaaggctgg aagttcaatg gtggaagctt atattatttt tctagtgtca agaagtcttg
1501 gcatgaggct gagcagttct gcgtgtccca gggagcccat ctggcatctg tggcctccaa
1561 ggaggagcag gcatttctgg tagagttcac aagtaaagtg tactactgga tcggtctcac
1621 tgacaggggc acagagggct cctggcgctg gacagatggg acaccattca acgccgccca
1681 gaacaaagcg gccactaggg gatgaaggac ccatctcaag tcagctccct agactcatcc
1741 catgtcagct ccctaggagc cacagcacca ggaagggatg
//