LOCUS BC139723 2012 bp mRNA linear HUM 05-APR-2007
DEFINITION Homo sapiens C-type lectin domain family 4, member F, mRNA (cDNA
clone MGC:129639 IMAGE:40007404), complete cds.
ACCESSION BC139723
VERSION BC139723.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2012)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2012)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (04-APR-2007) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Baylor Human Genome Sequencing Center
cDNA Library Preparation: Baylor Human Genome Sequencing Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCG Plate: 18 Row: h Column: 4.
FEATURES Location/Qualifiers
source 1..2012
/db_xref="H-InvDB:HIT000391157"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:129639 IMAGE:40007404"
/tissue_type="PCR rescued clones"
/clone_lib="NIH_MGC_283"
/note="Vector: pCR-Blunt II-TOPO with reversed insert;
Clone identification sequence tag: TTTACATC sequenced from
the forward primer"
gene 1..2012
/gene="CLEC4F"
/gene_synonym="KCLR"
/db_xref="GeneID:165530"
/db_xref="HGNC:HGNC:25357"
CDS 25..1728
/gene="CLEC4F"
/gene_synonym="KCLR"
/codon_start=1
/product="CLEC4F protein"
/protein_id="AAI39724.1"
/db_xref="GeneID:165530"
/db_xref="HGNC:HGNC:25357"
/translation="MDGEAVRFCTDNQCVSLHPQEVDSVAMAPAAPKIPRLVQATPAF
MAVTLVFSLVTLFVVVQQQTRPVPKPVQAVILGDNITGHLPFEPNNHHHFGREAEMRE
LIQTFKGHMENSSAWVVEIQMLKCRVDNVNSQLQVLGDHLGNTNADIQMVKGVLKDAT
TLSLQTQMLRSSLEGTNAEIQRLKEDLEKADALTFQTLNFLKSSLENTSIELHVLSRG
LENANSEIQMLNASLETANTQAQLANSSLKNANAEIYVLRGHLDSVNDLRTQNQVLRN
SLEGANAEIQGLKENLQNTNALNSQTQAFIKSSFDNTSAEIQFLRGHLERAGDEIHVL
KRDLKMVTAQTQKANGRLDQTDTQIQVFKSEMENVNTLNAQIQVLNGHMKNASREIQT
LKQGMKNASALTSQTQMLDSNLQKASAEIQRLRGDLENTKALTMEIQQEQSRLKTLHV
VITSQEQLQRTQSQLLQMVLQGWKFNGGSLYYFSSVKKSWHEAEQFCVSQGAHLASVA
SKEEQAFLVEFTSKVYYWIGLTDRGTEGSWRWTDGTPFNAAQNKASHSTRKGCCLHLT
V"
BASE COUNT 584 a 459 c 520 g 449 t
ORIGIN
1 tgctggagga tcaaggaagc agagatggac ggtgaggcag tccgcttctg cacagataac
61 cagtgtgtct ccctgcaccc ccaagaggtg gactctgtgg caatggctcc tgcagccccc
121 aagataccga ggctcgttca ggctaccccg gcatttatgg ctgtgacctt ggtcttctct
181 cttgtgactc tctttgtagt ggttcaacag cagacaagac ctgttccgaa gcctgtgcaa
241 gccgtaattc tgggagacaa cattactggg catttacctt ttgaacccaa caatcatcac
301 cactttggca gggaggcaga aatgcgagag cttatccaga catttaaagg ccacatggag
361 aattccagtg cctgggtagt agaaatccag atgttgaagt gcagagtgga caatgtcaat
421 tcgcagctcc aggtgctcgg tgatcatctg ggaaacacca atgctgacat ccagatggta
481 aaaggagttc taaaggatgc cactacattg agtttgcaga cacagatgtt aaggagttcc
541 ctggagggaa ccaatgctga gatccagagg ctcaaggaag accttgaaaa ggcagatgct
601 ttaactttcc agacgctgaa tttcttaaaa agcagtttag aaaacaccag cattgagctc
661 cacgtgctaa gcagaggctt agaaaatgca aactctgaaa ttcagatgtt gaatgccagt
721 ttggaaacgg caaataccca ggctcagtta gccaatagca gtttaaagaa cgctaatgct
781 gagatctatg ttttgagagg ccatctagat agtgtcaatg acttgaggac ccagaaccag
841 gttttaagaa atagtttgga aggagccaat gctgagatcc agggactaaa ggaaaatttg
901 cagaacacaa atgctttaaa ctcccagacc caggccttta taaaaagcag ttttgacaac
961 actagtgctg agatccagtt cttaagaggt catttggaaa gagctggtga tgaaattcac
1021 gtgttaaaaa gggatttgaa aatggtcaca gcccagaccc aaaaagcaaa tggccgtctg
1081 gaccagacag atactcagat tcaggtattc aagtcagaga tggaaaatgt gaatacctta
1141 aatgcccaga ttcaggtctt aaatggtcat atgaaaaatg ccagcagaga gatacagacc
1201 ctaaaacaag gaatgaagaa tgcttcagcc ttaacttccc agacccagat gttagacagc
1261 aatctgcaga aggccagtgc cgagatccag aggttaagag gggatctaga gaacaccaaa
1321 gctctaacca tggaaatcca gcaggagcag agtcgcctga agaccctcca tgtggtcatt
1381 acttcacagg aacagctaca aagaacccaa agtcagcttc tccagatggt cctgcaaggc
1441 tggaagttca atggtggaag cttatattat ttttctagtg tcaagaagtc ttggcatgag
1501 gctgagcagt tctgcgtgtc ccagggagcc catctggcat ctgtggcctc caaggaggag
1561 caggcatttc tggtagagtt cacaagtaaa gtgtactact ggatcggtct cactgacagg
1621 ggcacagagg gctcctggcg ctggacagat gggacaccat tcaacgccgc ccagaacaaa
1681 gcgagccaca gcaccaggaa gggatgctgc cttcatctaa cagtataaag ccctgttgtc
1741 ttcgggtttt gggaaaagaa tcagtctgac aactggcggc acaagaatgg gcagactgaa
1801 gactgtgtcc aaattcagca gaagtggaat gacatgacct gtgacacccc ctatcagtgg
1861 gtgtgcaaga agcccatggg ccagggtgtg gcctgagggc aggccagagc tgaggggctg
1921 ctcctgcttg ccaatactga ccctcctcct cgatgccttc ggagcctctg agctctgctt
1981 gttctctggg accttccgtt ggccttgtgg ac
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