LOCUS BC136579 3742 bp mRNA linear HUM 11-FEB-2009
DEFINITION Homo sapiens AF4/FMR2 family, member 3, mRNA (cDNA clone MGC:168192
IMAGE:9020569), complete cds.
ACCESSION BC136579
VERSION BC136579.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3742)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3742)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (29-MAR-2007) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Ambion
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: LLDM Plate: 670 Row: n Column: 23
single stranded.
FEATURES Location/Qualifiers
source 1..3742
/db_xref="H-InvDB:HIT000500591"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:168192 IMAGE:9020569"
/tissue_type="Testicle, PCR rescued clones"
/clone_lib="NIH_MGC_382"
/lab_host="DH10B"
/note="Vector: pCR4-TOPO with reversed insert; Clone
identification sequence tag: ACCTTCTG"
gene 1..3742
/gene="AFF3"
/gene_synonym="MLLT2-like"
/db_xref="GeneID:3899"
/db_xref="HGNC:HGNC:6473"
/db_xref="MIM:601464"
CDS 20..3700
/gene="AFF3"
/gene_synonym="MLLT2-like"
/codon_start=1
/product="AF4/FMR2 family, member 3"
/protein_id="AAI36580.1"
/db_xref="GeneID:3899"
/db_xref="HGNC:HGNC:6473"
/db_xref="MIM:601464"
/translation="MDSFDLALLQEWDLESLCVYEPDRNALRRKERERRNQETQQDDG
TFNSSYSLFSEPYKTNKGDELSNRIQNTLGNYDEMKDFLTDRSNQSHLVGVPKPGVPQ
TPVNKIDEHFVADSRAQNQPSSICSTTTSTPAAVPVQQSKRGTMGWQKAGHPPSDGQQ
RATQQGSLRTLLGDGVGRQQPRAKQVCNVEVGLQTQERPPAMAAKHSSSGHCVQNFPP
SLASKPSLVQQKPTAYVRPMDGQDQAPDESPKLKSSSETSVHCTSYRGVPASKPEPAR
AKAKLSKFSIPKQGEESRSGETNSCVEEIIREMTWLPPLSAIQAPGKVEPTKFPFPNK
DSQLVSSGHNNPKKGDAEPESPDNGTSNTSMLEDDLKLSSDEEENEQQAAQRTALRAL
SDSAVVQQPNCRTSVPSSKGSSSSSSSGSSSSSSDSESSSGSDSETESSSSESEGSKP
PHFSSPEAEPASSNKWQLDKWLNKVNPHKPPILIQNESHGSESNQYYNPVKEDVQDCG
KVPDVCQPSLREKEIKSTCKEEQRPRTANKAPGSKGVKQKSPPAAVAVAVSAAAPPPA
VPCAPAENAPAPARRSAGKKPTRRTERTSAGDGANCHRPEEPAAADALGTSVVVPPEP
TKTRPCGNNRASHRKELRSSVTCEKRRTRGLSRIVPKSKEFIETESSSSSSSSDSDLE
SEQEEYPLSKAQTVAASASSGNDQRLKEAAANGGSGPRAPVGSINARTTSDIAKELEE
QFYTLVPFGRNELLSPLKDSDEIRSLWVKIDLTLLSRIPEHLPQEPGVLSAPATKDSE
SAPPSHTSDTPAEKALPKSKRKRKCDNEDDYREIKKSQGEKDSSSRLATSTSNTLSAN
HCNMNINSVAIPINKNEKMLRSPISPLSDASKHKYTSEDLTSSSRPNGNSLFTSASSS
KKPKADSQLQPHGGDLTKAAHNNSENIPLHKSRPQTKPWSPGSNGHRDCKRQKLVFDD
MPRSADYFMQEAKRMKHKADAMVEKFGKALNYAEAALSFIECGNAMEQGPMESKSPYT
MYSETVELIRYAMRLKTHSGPNATPEDKQLAALCYRCLALLYWRMFRLKRDHAVKYSK
ALIDYFKNSSKAAQAPSPWGASGKSTGTPSPMSPNPSPASSVGSQGSLSNASALSPST
IVSIPQRIHQMAANHVSITNSILHSYDYWEMADNLAKENREFFNDLDLLMGPVTLHSS
MEHLVQYSQQGLHWLRNSAHLS"
BASE COUNT 1020 a 1133 c 961 g 628 t
ORIGIN
1 gacgctgaca cctcccacca tggacagctt cgacttagcc ctgctccagg aatgggacct
61 cgagtcactg tgtgtctatg aaccagatag aaatgcatta cggaggaaag aacgagaaag
121 aagaaatcaa gaaactcaac aggatgatgg cacgtttaat tctagttact ctctcttcag
181 tgagccctac aagactaaca agggggatga actctccaac cggatccaga acactttagg
241 caattatgat gaaatgaaag actttttaac tgatagatcc aatcagagtc atctcgttgg
301 agttcccaaa cctggggttc ctcagactcc tgtgaacaag atcgatgaac attttgttgc
361 agattcaaga gcccagaacc agccctcgtc tatctgtagc actacaactt ccacaccagc
421 agctgtcccc gtgcagcaga gtaagagagg cactatgggc tggcagaagg ctgggcaccc
481 accctctgac ggccaacaga gagcaacaca acagggctct ctcaggacct tgcttggaga
541 tggtgttggc agacagcagc ctcgggccaa acaagtgtgc aatgtggagg tgggccttca
601 gacccaggag aggccacctg ccatggcggc caagcacagc agcagcggac actgtgttca
661 gaactttcct ccatccctag cttcaaaacc cagcctggtc cagcagaaac cgaccgcgta
721 tgtgaggcca atggacggcc aagatcaggc ccctgatgag tctcctaagc tgaagtcgtc
781 ttcggaaacc agcgtgcact gcacatcata caggggagtc cctgccagca agccggagcc
841 tgccagagcc aaggccaagc tctccaagtt cagcatcccc aagcaggggg aggagagtag
901 atctggagaa accaacagct gtgttgaaga aataatccgg gagatgacct ggcttccacc
961 actttctgct attcaagcac ctggcaaagt ggaaccaacc aaatttccat ttccaaataa
1021 ggactctcag cttgtatcct ctggacacaa taatccaaag aaaggtgatg cagagccaga
1081 gagtccagac aatggcacat cgaatacatc aatgctggaa gatgacctta agctaagcag
1141 tgatgaagag gagaatgaac agcaggcagc tcagagaacg gctctccgcg ctctctctga
1201 cagcgccgtg gtccagcagc ccaactgcag aacctcggtg ccttccagca agggcagcag
1261 cagcagcagc agcagcggca gcagcagctc ctccagcgac tcagagagca gctccggatc
1321 tgactcggag accgagagca gctccagcga gagtgagggc agcaagcccc cccacttctc
1381 cagccccgag gctgaaccgg catcctctaa caagtggcag ctggataaat ggctaaacaa
1441 agttaatccc cacaagcctc ctattctgat ccaaaatgaa agccacgggt cagagagcaa
1501 tcagtactac aacccggtga aagaggacgt ccaggactgt gggaaagtcc ccgacgtttg
1561 ccagcccagc ctgagagaga aggagatcaa gagcacttgc aaggaggagc aaaggccaag
1621 gacagccaac aaggcccctg ggagtaaagg cgtgaagcag aagtccccgc ccgcggccgt
1681 ggccgtggcg gtgagcgcag ccgccccgcc acccgcagtg ccctgtgcgc ccgcggagaa
1741 cgcgcccgcg cctgcccgga ggtccgcggg caagaagccc accaggcgca ccgagaggac
1801 ctcagccggg gacggcgcca actgccaccg gcccgaggag cccgcggccg cggacgcgct
1861 ggggacgagc gtggtggtcc ccccggagcc caccaaaacc aggccctgtg gcaacaacag
1921 agcgagccac cgcaaggagc tgcgctcctc cgtgacctgc gagaagcgcc gcacgcgggg
1981 gctaagcagg atcgtcccca aatccaagga gttcattgag acagagtcgt catcttcatc
2041 ctcctcctcg gactccgacc tggagtccga gcaggaggag taccctctgt ccaaagcaca
2101 gaccgtggct gcctctgcct cctccgggaa tgatcagagg ctgaaggagg ccgctgccaa
2161 cgggggcagt ggtcctaggg cccctgtagg ctccatcaac gccaggacca ccagtgacat
2221 cgccaaggag ctggaggagc agttctacac actggtcccc tttggccgga acgaacttct
2281 ctcccctcta aaggacagtg atgagatcag gtctctctgg gtcaaaatcg acctgaccct
2341 cctgtccagg atcccagaac acctgcccca ggagccaggg gtattgagcg cccctgccac
2401 caaggactct gagagcgcac cgcccagcca cacctcggac acacctgcag aaaaggcttt
2461 gccaaaatcc aagaggaaac gcaagtgtga caacgaagac gactacaggg agatcaagaa
2521 gtcccaggga gagaaagaca gctcttcaag actggccacc tccaccagta atactttgtc
2581 tgcaaaccac tgcaacatga acatcaacag tgtggcaata ccaataaata aaaatgaaaa
2641 aatgcttcgg tcgcccatct cacccctctc tgatgcatct aaacacaaat acaccagcga
2701 ggacttaact tcttccagcc gacctaatgg caacagtttg tttacttcag cctcttccag
2761 caaaaagcct aaggccgaca gccagctgca gcctcacggc ggagacctca cgaaagcagc
2821 tcacaacaat tctgaaaaca ttcccctcca caagtcacgg ccgcagacga agccgtggtc
2881 tccaggctcc aacggccaca gggactgcaa gaggcagaaa cttgtcttcg atgatatgcc
2941 tcgcagtgcc gattatttta tgcaagaagc taaacgaatg aagcataaag cagatgcaat
3001 ggtggaaaag tttggaaagg ctttgaacta tgctgaagca gcattgtcgt ttatcgagtg
3061 tggaaatgca atggaacaag gccccatgga atccaaatct ccttatacga tgtattcaga
3121 aacagtagag ctcatcaggt atgctatgag actaaaaacc cactcaggcc ccaatgccac
3181 accagaagac aaacaactgg ctgcattatg ttaccgatgc ctggccctcc tgtactggcg
3241 gatgtttcga ctcaaaaggg accacgctgt aaagtattca aaagcactaa tcgactattt
3301 caagaactca tctaaagccg cccaagcccc atctccgtgg ggggccagtg gaaagagcac
3361 tggaacccca tcccccatgt ctcccaaccc ctctcccgcc agctccgtgg ggtctcaggg
3421 cagcctctcc aacgccagcg ccctgtcccc gtcgaccatc gtcagcatcc cacagcgcat
3481 ccaccagatg gcggccaacc acgtcagcat caccaacagc atcctgcaca gctacgacta
3541 ctgggagatg gccgacaacc tggccaagga aaaccgagaa ttcttcaacg acctggatct
3601 gctcatgggg ccggtcaccc tgcacagcag catggagcac ctggtccagt actcccaaca
3661 gggcctgcac tggctgcgga acagcgccca cctgtcatag ggacctcacc ctggggccag
3721 agtgggctct ggtctccaca ga
//