LOCUS BC126228 1144 bp mRNA linear HUM 17-JUL-2007
DEFINITION Homo sapiens visual system homeobox 1, mRNA (cDNA clone MGC:161506
IMAGE:8991944), complete cds.
ACCESSION BC126228
VERSION BC126228.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1144)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1144)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (22-OCT-2006) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Mike Brownstein, NIMH
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCB Plate: 7 Row: F Column: 6.
FEATURES Location/Qualifiers
source 1..1144
/db_xref="H-InvDB:HIT000388820"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:161506 IMAGE:8991944"
/tissue_type="Pooled, cerebellum, kidney, placenta,
testis, lung, colon, liver, heart, thyroid, bladder,
uterus, PCR rescued clones"
/clone_lib="NIH_MGC_361"
/lab_host="DH10B"
/note="Vector: pCR4-TOPO; Clone identification sequence
tag: CCTGCGTC"
gene 1..1144
/gene="VSX1"
/gene_synonym="KTCN"
/gene_synonym="PPD"
/gene_synonym="RINX"
/db_xref="GeneID:30813"
/db_xref="HGNC:HGNC:12723"
/db_xref="MIM:605020"
CDS 26..1123
/gene="VSX1"
/gene_synonym="KTCN"
/gene_synonym="PPD"
/gene_synonym="RINX"
/codon_start=1
/product="visual system homeobox 1"
/protein_id="AAI26229.1"
/db_xref="GeneID:30813"
/db_xref="HGNC:HGNC:12723"
/db_xref="MIM:605020"
/translation="MTGRDSLSDGRTSSRALVPGGSPRGSRPRGFAITDLLGLEAELP
APAGPGQGSGCEGPAVAPCPGPGLDGSSLARGALPLGLGLLCGFGTQPPAAARAPCLL
LADVPFLPPRGPEPAAPLAPSRPPPALGRQKRSDSVSTSDEDSQSEDRNDLKASPTLG
KRKKRRHRTVFTAHQLEELEKAFSEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAK
WRKREKRWGGSSVMAEYGLYGAMVRHCIPLPDSVLNSAEGGLLGSCAPWLLGMHKKSM
GMIRKPGSEDKLAGLWGSDHFKEGSSQSESGSQRGSDKVSPENGLEDVAIDLSSSARQ
ETKKVHPGAGAQGGSNSTALEGPQPGKVGAT"
BASE COUNT 217 a 365 c 385 g 177 t
ORIGIN
1 ctcgcgcctt gcttgctaag gaaccatgac cggccgggac tcgctttccg acgggcgcac
61 tagcagcagg gcgctggtgc ctggcggttc ccctaggggc tcgcgccccc ggggcttcgc
121 catcacggac ctgctgggct tggaggccga gctgccggcg cccgctggcc caggacaggg
181 atctggctgc gagggtccgg cagtcgcgcc gtgcccgggc ccggggcttg acggctccag
241 cctggcgcgt ggggccctac cgctgggact cggcctcctc tgtggcttcg gcacgcagcc
301 gccggcggcc gctcgagcac cctgcctgct cctagcggac gtgccgttcc tgccgcccag
361 gggccccgag cccgctgccc cgctggctcc cagccgtccg ccgcctgcgc tcggccgcca
421 gaagcgcagc gacagcgtct ccacgtccga tgaggacagc cagtctgaag acaggaatga
481 cctaaaggca tcccccacct tgggcaagag gaagaagcgg cggcacagga cagttttcac
541 tgctcaccag ctggaagagt tggagaaggc attcagcgag gcccactacc ctgatgtgta
601 tgcccgagaa atgctggctg tgaaaactga gctccccgaa gaccggatac aggtctggtt
661 tcaaaaccgc agggccaaat ggcgcaagcg ggagaagcgc tggggcggca gcagcgtgat
721 ggccgagtac gggctgtacg gggccatggt gcgccactgc atcccgctgc cagactccgt
781 gctcaactcc gccgagggcg gcctgctggg ctcctgcgcg ccctggctcc tggggatgca
841 taaaaaatcc atggggatga taaggaagcc aggaagtgaa gataagttgg caggactctg
901 gggctctgac cacttcaaag aaggttctag ccagagtgag tcaggatcac agagaggctc
961 agataaagtg agccctgaga atggcttgga agatgtggct attgacctct ccagctctgc
1021 ccggcaggag accaagaaag tgcaccctgg ggctggtgct caaggaggct ccaactccac
1081 ggcactggag gggccccagc cagggaaggt gggagccaca tgagacccac aggtcccact
1141 gtca
//