LOCUS BC084578 2160 bp mRNA linear HUM 03-JAN-2005 DEFINITION Homo sapiens agrin, mRNA (cDNA clone IMAGE:5727776), partial cds. ACCESSION BC084578 VERSION BC084578.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2160) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2160) AUTHORS Director MGC Project. TITLE Direct Submission JOURNAL Submitted (12-OCT-2004) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Invitrogen cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 174 Row: a Column: 19 This clone was selected for full length sequencing because it passed the following selection criteria: Hexamer frequency ORF analysis. FEATURES Location/Qualifiers source 1..2160 /db_xref="H-InvDB:HIT000266086" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:5727776" /tissue_type="Brain, hippocampus" /clone_lib="NIH_MGC_124" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene <1..>2160 /gene="AGRN" /gene_synonym="FLJ45064" /db_xref="GeneID:375790" /db_xref="MIM:103320" CDS <1..>2160 /gene="AGRN" /gene_synonym="FLJ45064" /codon_start=3 /product="AGRN protein" /protein_id="AAH84578.1" /db_xref="GeneID:375790" /db_xref="MIM:103320" /translation="ACTLGREIQVARKGPCDRCGQCRFGALCEAETGRCVCPSECVAL AQPVCGSDGHTYPSECMLHVHACTHQISLHVASAGPCETCGDAVCAFGAVCSAGQCVC PRCEHPPPGPVCGSDGVTYGSACELREAACLQQTQIEEARAGPCEQAECGSGGSGSGE DGDCEQELCRQRGGIWDEDSEDGPCVCDFSCQSVPGSPVCGSDGVTYSTECELKKARC ESQRGLYVAAQGACRGPTFAPLPPVAPLHCAQTPYGCCQDNITAARGVGLAGCPSACQ CNPHGSYGGTCDPATGQCSCRPGVGGLRCDRCEPGFWNFRGIVTDGRSGCTPCSCDPQ GAVRDDCEQMTGLCSCKPGVAGPKCGQCPDGRALGPAGCEADASAPATCAEMRCEFGA RCVEESGSAHCVCPMLTCPEANATKVCGSDGVTYGNECQLKTIACRQGLQISIQSLGP CQEAVAPSTHPTSASVTVTTPGLLLSQALPAPPGALPLAPSSTAHSQTTPPPSSRPRT TASVPRTTVWPVLTVPPTAPSPAPSLVASAFGESGSTDGSSDEELSGDQEASGGGSGG LEPLEGSSVATPGPPVERASCYNSALGCCSDGKTPSLDAEGSNCPATKVFQGVLELEG VEGQELFYTPEMADPKSELFGETARSIESTLDDLFRNSDVKKDFRSVRLRDLGPGKSV RAIVDVHFDPTTAFRAPDVARALLRQIQVSRRRSLGV" BASE COUNT 335 a 721 c 739 g 365 t ORIGIN 1 cggcctgtac cctcgggcgg gagatccagg tggcgcgcaa aggaccctgt gaccgctgcg 61 ggcagtgccg ctttggagcc ctgtgcgagg ccgagaccgg gcgctgcgtg tgcccctctg 121 aatgcgtggc tttggcccag cccgtgtgtg gctccgacgg gcacacgtac cccagcgagt 181 gcatgctgca cgtgcacgcc tgcacacacc agatcagcct gcacgtggcc tcagctggac 241 cctgtgagac ctgtggagat gccgtgtgtg cttttggggc tgtgtgctcc gcagggcagt 301 gtgtgtgtcc ccggtgtgag caccccccgc ccggccccgt gtgtggcagc gacggtgtca 361 cctacggcag tgcctgcgag ctacgggaag ccgcctgcct ccagcagaca cagatcgagg 421 aggcccgggc agggccgtgc gagcaggccg agtgcggttc cggaggctct ggctctgggg 481 aggacggtga ctgtgagcag gagctgtgcc ggcagcgcgg tggcatctgg gacgaggact 541 cggaggacgg gccgtgtgtc tgtgacttca gctgccagag tgtcccaggc agcccggtgt 601 gcggctcaga tggggtcacc tacagcaccg agtgtgagct gaagaaggcc aggtgtgagt 661 cacagcgagg gctctacgta gcggcccagg gagcctgccg aggccccacc ttcgccccgc 721 tgccgcctgt ggccccctta cactgtgccc agacgcccta cggctgctgc caggacaata 781 tcaccgcagc ccggggcgtg ggcctggctg gctgccccag tgcctgccag tgcaaccccc 841 atggctctta cggcggcacc tgtgacccag ccacaggcca gtgctcctgc cgcccaggtg 901 tggggggcct caggtgtgac cgctgtgagc ctggcttctg gaactttcga ggcatcgtca 961 ccgatggccg gagtggctgt acaccctgca gctgtgatcc ccaaggcgcc gtgcgggatg 1021 actgtgagca gatgacgggg ctgtgctcgt gtaagcccgg ggtggctgga cccaagtgtg 1081 ggcagtgtcc agacggccgt gccctgggcc ccgcgggctg tgaagctgac gcttctgcgc 1141 ctgcgacctg tgcggagatg cgctgtgagt tcggtgcgcg gtgcgtggag gagtctggct 1201 cagcccactg tgtctgcccg atgctcacct gtccagaggc caacgctacc aaggtctgtg 1261 ggtcagatgg agtcacatac ggcaacgagt gtcagctgaa gaccatcgcc tgccgccagg 1321 gcctgcaaat ctctatccag agcctgggcc cgtgccagga ggctgttgct cccagcactc 1381 acccgacatc tgcctccgtg actgtgacca ccccagggct cctcctgagc caggcactgc 1441 cggccccccc cggcgccctc cccctggctc ccagcagtac cgcacacagc cagaccaccc 1501 ctccgccctc atcgcgacct cggaccactg ccagcgtccc caggaccacc gtgtggcccg 1561 tgctgacggt gccccccacg gcaccctccc ctgcacccag cctggtggcg tccgcctttg 1621 gtgaatctgg cagcactgat ggaagcagcg atgaggaact gagcggggac caggaggcca 1681 gtgggggtgg ctctgggggg ctcgagccct tggagggcag cagcgtggcc acccctgggc 1741 cacctgtcga gagggcttcc tgctacaact ccgcgttggg ctgctgctct gatgggaaga 1801 cgccctcgct ggacgcagag ggctccaact gccccgccac caaggtgttc cagggcgtcc 1861 tggagctgga gggcgtcgag ggccaggagc tgttctacac gcccgagatg gctgacccca 1921 agtcagaact gttcggggag acagccagga gcattgagag caccctggac gacctcttcc 1981 ggaattcaga cgtcaagaag gatttccgga gtgtccgctt gcgggacctg gggcccggca 2041 aatccgtccg cgccattgtg gatgtgcact ttgaccccac cacagccttc agggcacccg 2101 acgtggcccg ggccctgctc cggcagatcc aggtgtccag gcgccggtcc ttgggggtga //