LOCUS BC078168 2664 bp mRNA linear HUM 03-NOV-2008 DEFINITION Homo sapiens coiled-coil domain containing 88A, mRNA (cDNA clone IMAGE:6176807), partial cds. ACCESSION BC078168 VERSION BC078168.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2664) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2664) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (19-JUL-2004) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 174 Row: l Column: 19. FEATURES Location/Qualifiers source 1..2664 /db_xref="H-InvDB:HIT000265727" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:6176807" /tissue_type="Uterus, leiomyosarcoma" /clone_lib="NIH_MGC_71" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene <1..>2664 /gene="CCDC88A" /gene_synonym="APE" /gene_synonym="GIRDIN" /gene_synonym="GIV" /gene_synonym="GRDN" /gene_synonym="HkRP1" /db_xref="GeneID:55704" /db_xref="HGNC:HGNC:25523" /db_xref="MIM:609736" CDS <1..>2664 /gene="CCDC88A" /gene_synonym="APE" /gene_synonym="GIRDIN" /gene_synonym="GIV" /gene_synonym="GRDN" /gene_synonym="HkRP1" /codon_start=2 /product="CCDC88A protein" /protein_id="AAH78168.1" /db_xref="GeneID:55704" /db_xref="HGNC:HGNC:25523" /db_xref="MIM:609736" /translation="EIFTPLLEQFMTSPLVTWVKTFGPLAAGNGTNLDEYVALVDGVF LNQVMLQINPKLESQRVNKKVNNDASLRMHNLSILVRQIKFYYQETLQQLIMMSLPNV LIIGKNPFSEQGTEEVKKLLLLLLGCAVQCQKKEEFIERIQGLDFDTKAAVAAHIQEV THNQENVFDLQWMEVTDMSQEDIEPLLKNMALHLKRLIDERDEHSETIIELSEERDGL HFLPHASSSAQSPCGSPGMKRTESRQHLSVELADAKAKIRRLRQELEEKTEQLLDCKQ ELEQMEIELKRLQQENMNLLSDARSARMYRDELDALREKAVRVDKLESEVSRYKERLH DIEFYKARVEELKEDNQVLLETKTMLEDQLEGTRARSDKLHELEKENLQLKAKLHDME MERDMDRKKIEELMEENMTLEMAQKQSMDESLHLGWELEQISRTSELSEAPQKSLGHE VNELTSSRLLKLEMENQSLTKTVEELRTTVDSVEGNASKILKMEKENQRLSKKVEILE NEIVQEKQSLQNCQNLSKDLMKEKAQLEKTIETLRENSERQIKILEQENEHLNQTVSS LRQRSQISAEARVKDIEKENKILHESIKETSSKLSKIEFEKRQIKKELEHYKEKGERA EELENELHHLEKENELLQKKITNLKITCEKIEALEQENSELERENRKLKKTLDSFKNL TFQLESLEKENSQLDEENLELRRNVESLKCASMKMAQLQLENKELESEKEQLKKGLEL LKASFKKTERLEVSYQGLDIENQRLQKTLENSNKKIQQLESELQDLEMENQTLQKNLE ELKISSKRLEQLEKENKSLEQETSQLEKDKKQLEKENKRLRQQAEIKDTTLEENNVKI GNLEKENKTLSKEIGIYKESCVRLKELKKKK" BASE COUNT 1097 a 395 c 566 g 606 t ORIGIN 1 cgaaattttt actccccttc tggagcagtt catgaccagc cctttggtca cttgggttaa 61 aacgtttgga cctctggccg caggaaatgg gaccaacctt gatgaatatg tggctttggt 121 ggatggggta ttcttgaacc aggtcatgct ccaaattaat cctaaattgg agagtcagag 181 agtaaataaa aaagtcaata atgatgcctc acttagaatg cacaatctat ccattttggt 241 gagacagata aaattttatt accaggagac tttgcagcaa ttgatcatga tgtcgttgcc 301 aaatgtctta atcattggca aaaatccctt ttctgaacaa ggcacagaag aagttaaaaa 361 actgctttta cttttattgg gttgtgcagt tcagtgtcag aaaaaagagg aatttattga 421 aagaattcaa ggtttagatt ttgatacaaa agcagcggtt gccgcacata ttcaagaggt 481 aactcataat caggaaaatg tgtttgacct gcaatggatg gaagtgactg atatgtcgca 541 ggaggacata gaaccactct tgaaaaatat ggcattgcat ctaaaaagac ttatagatga 601 gagagatgaa cattcagaga ctatcataga actctctgaa gagcgggatg gtctccattt 661 tctaccccat gcctcttcat ctgcacagtc accctgtggt tctccaggca tgaagcgaac 721 agaaagtcga caacatctgt cggtggaact ggcagatgct aaagccaaga taagaaggct 781 taggcaggaa ttggaggaaa agactgagca gttgttggat tgtaaacaag aacttgagca 841 aatggaaata gaactcaaaa ggctgcaaca agagaacatg aatttgcttt cggatgctcg 901 ctctgccaga atgtaccgag atgaattaga tgcacttcga gagaaagcag tcagagtcga 961 taagcttgaa agtgaagtca gcagatataa agagagacta catgatattg aattttataa 1021 ggcaagagtt gaggaattaa aagaagacaa tcaagtttta ttagaaacaa aaaccatgtt 1081 ggaagaccaa ctagagggaa ctcgtgctcg ttctgataaa ttacatgaat tagaaaaaga 1141 gaacttacaa ctgaaagcta aacttcatga tatggaaatg gaacgagata tggatagaaa 1201 aaagattgaa gaattaatgg aagaaaatat gactttggaa atggcacaga aacaaagtat 1261 ggatgaatca ttacatcttg gctgggaact ggaacagata tccagaacta gtgaactttc 1321 cgaagcaccc cagaaatccc tgggccatga ggtgaatgag ttgacatcaa gtagattatt 1381 gaagctagag atggaaaatc aaagtttgac aaaaaccgta gaagagcttc ggactactgt 1441 ggattctgta gaaggcaatg cttccaaaat cctgaaaatg gaaaaagaaa atcaaaggct 1501 cagtaaaaag gttgagattc ttgaaaatga gattgttcaa gaaaagcaaa gtcttcagaa 1561 ttgtcagaat ttaagcaagg atctaatgaa ggagaaagct cagcttgaaa aaacaataga 1621 aacactgaga gaaaattcag agagacagat taagatactg gaacaggaaa atgaacatct 1681 gaatcaaaca gtgtcttcct taaggcagcg gtcccagata agtgcagaag caagagtgaa 1741 agacattgaa aaagaaaaca aaattcttca tgaatctatc aaagaaacaa gtagcaagct 1801 aagcaagatt gaatttgaaa aaagacaaat taaaaaagaa ttggaacatt ataaagaaaa 1861 aggagaacga gctgaagaac ttgaaaatga attgcatcat cttgaaaaag aaaatgaatt 1921 attacagaaa aaaataacta atttaaaaat tacttgtgaa aaaattgagg ccttagaaca 1981 agaaaattca gagctagaaa gagaaaatag aaaattaaaa aaaacattgg atagctttaa 2041 aaatctgacc tttcagttag aatccctaga aaaagagaat tcccaacttg atgaggaaaa 2101 cttagaactg cgaaggaatg tagaatcttt gaagtgtgca agcatgaaaa tggctcagct 2161 acagctagaa aacaaagaac tggaaagtga aaaagagcaa cttaagaagg gtttggagct 2221 cctgaaagca tctttcaaga aaacagaacg cttagaagtt agctaccagg gtttagatat 2281 agaaaatcaa agactgcaaa aaactttaga gaacagcaat aaaaaaatcc agcaattaga 2341 gagtgaacta caagacttag agatggaaaa tcaaacattg cagaaaaacc tagaagaact 2401 aaaaatatct agcaaaagac tagaacagct ggaaaaagaa aataaatcat tagagcaaga 2461 gacttctcaa ctggaaaagg ataagaaaca attggagaag gaaaataaga gactccgaca 2521 acaagcagaa attaaagata ccacattaga agaaaataat gtgaagattg gaaatttgga 2581 aaaagaaaac aaaaccctat ccaaagaaat tggtatatat aaagaatctt gtgtccgtct 2641 gaaagaacta aaaaaaaaaa aaaa //