LOCUS BC069014 1622 bp mRNA linear HUM 16-SEP-2005
DEFINITION Homo sapiens solute carrier family 9 (sodium/hydrogen exchanger),
member 3 regulator 2, mRNA (cDNA clone IMAGE:5431539), partial cds.
ACCESSION BC069014
VERSION BC069014.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1622)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1622)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-APR-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 54 Row: f Column: 6.
FEATURES Location/Qualifiers
source 1..1622
/db_xref="H-InvDB:HIT000263198"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5431539"
/tissue_type="Brain, astrocytoma, grade IV"
/clone_lib="NIH_MGC_98"
/lab_host="DH10B"
/note="Vector: pOTB7"
gene <1..1622
/gene="SLC9A3R2"
/gene_synonym="E3KARP"
/gene_synonym="NHE3RF2"
/gene_synonym="NHERF-2"
/gene_synonym="NHERF2"
/gene_synonym="OCTS2"
/gene_synonym="SIP-1"
/gene_synonym="SIP1"
/gene_synonym="TKA-1"
/db_xref="GeneID:9351"
/db_xref="MIM:606553"
CDS <1..1121
/gene="SLC9A3R2"
/gene_synonym="E3KARP"
/gene_synonym="NHE3RF2"
/gene_synonym="NHERF-2"
/gene_synonym="NHERF2"
/gene_synonym="OCTS2"
/gene_synonym="SIP-1"
/gene_synonym="SIP1"
/gene_synonym="TKA-1"
/codon_start=3
/product="SLC9A3R2 protein"
/protein_id="AAH69014.1"
/db_xref="GeneID:9351"
/db_xref="MIM:606553"
/translation="RTGAAAEATAGCPAPPPPPSSPAPLPAGGRWAAGAMAAPEPLRP
RLCRLVRGEQGYGFHLHGEKGRRGQFIRRVEPGSPAEAAALRAGDRLVEVNGVNVEGE
THHQVVQRIKAVEGQTRLLVVDQETDEELRRRQLTCTEEMAQRGLPPAHDPWEPKPDW
AHTGSHSSEAGKKDVSGPLRELRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGS
PAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVDPETDEHFKRLRV
TPTEEHVEGPLPSPVTNGTSPAQLNGGSACSSRSDLPGSDKDTEDGSAWKQDPFQESG
LHLSPTAAEAKEKARAMRVNKRAPQMDWNRKREIFSNF"
BASE COUNT 331 a 537 c 527 g 227 t
ORIGIN
1 gccgaacagg agccgccgct gaagccaccg ccgggtgccc agcgccgccg ccgcccccga
61 gctcccccgc gcccctgccc gcgggcggcc ggtgggcagc gggcgccatg gccgcgccgg
121 agccgctgcg gccgcgcctg tgccgcttgg tgcgcggaga gcagggctac ggcttccacc
181 tgcacggcga gaagggccgc cgcgggcagt tcatccggcg cgtggaaccc ggttcccccg
241 ccgaggccgc cgcgctgcgc gctggggacc gcctggtcga ggtcaacggc gtcaacgtgg
301 agggcgagac gcaccaccag gtggtgcaaa ggatcaaggc tgtggagggg cagactcggc
361 tgctggtggt ggaccaggag acagatgagg agctccgccg gcggcagctg acctgtaccg
421 aggagatggc ccagcgaggg ctcccacccg cccacgaccc ctgggagccg aagccagact
481 gggcacacac cggcagccac agctccgaag ctggcaagaa ggatgtcagt gggcccctga
541 gggagctgcg ccctcggctc tgccacctgc gaaagggacc tcagggctat gggttcaacc
601 tgcatagtga caagtcccgg cccggccagt acatccgctc tgtggacccg ggctcacctg
661 ccgcccgctc tggcctccgc gcccaggacc ggctcattga ggtgaacggg cagaatgtgg
721 agggactgcg ccatgctgag gtggtggcca gcatcaaggc acgggaggac gaggcccggc
781 tgctggtcgt ggaccccgag acagatgaac acttcaagcg gcttcgggtc acacccaccg
841 aggagcacgt ggaaggtcct ctgccgtcac ccgtcaccaa tggaaccagc cctgcccagc
901 tcaatggtgg ctctgcgtgc tcgtcccgaa gtgacctgcc tggttccgac aaggacactg
961 aggatggcag tgcctggaag caagatccct tccaggagag cggcctccac ctgagcccca
1021 cggcggccga ggccaaggag aaggctcgag ccatgcgagt caacaagcgc gcgccacaga
1081 tggactggaa caggaagcgt gaaatcttca gcaacttctg agccccttcc tgcctgtctc
1141 gggaccctgg gacccctccc gcacggacct tgggcctcag cctgccccga gctcccccag
1201 cctcagtgga ctggagggtg gtcctgccat tgcccagaaa tcagccccag ccccggtgag
1261 cccccatcct gcccctgccc accaggtact gggggcctgt ggcagcaaga tagggggaga
1321 gagacccaga gatgtgagag agagtcagag acagagacag agagagagag agagagacac
1381 agagagagac agagagagag cgagcgagcg cgcggcagcc gcggggcgag ggcctttgct
1441 gctctgccgg ggcctgctga ctgaaaggaa tttgtgtttt tgcttttttt ccaaaaagat
1501 ctccagctcc acacatgttt ccacttaata ccagagaccc ccccccttcc cctccccctt
1561 gggacgcgct ctaaataatt gcaataaaac aaacctttct ctgcaaaaaa aaaaaaaaaa
1621 aa
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