LOCUS BC068277 3880 bp mRNA linear HUM 19-MAR-2009 DEFINITION Homo sapiens chromosome 2 open reading frame 55, mRNA (cDNA clone MGC:42367 IMAGE:4820685), complete cds. ACCESSION BC068277 VERSION BC068277.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3880) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3880) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (31-MAR-2004) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Miklos Palkovits, M.D., Ph.D. cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki Toshiyuki and Piero Carninci (RIKEN) cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Baylor College of Medicine Human Genome Sequencing Center Center code: BCM-HGSC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ Contact: amg@bcm.tmc.edu Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, A.N., Gibbs, R.A. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 71 Row: b Column: 1 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 46409355 The stop codon of the CDS annotated on this record is located > 55 bases upstream of a splice junction, and therefore the mRNA is predicted to be subject to nonsense-mediated mRNA decay (NMD). FEATURES Location/Qualifiers source 1..3880 /db_xref="H-InvDB:HIT000262991" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:42367 IMAGE:4820685" /tissue_type="Brain, hippocampus" /clone_lib="NIH_MGC_95" /lab_host="DH10B" /note="Vector: pBluescriptR" gene 1..3880 /gene="C2orf55" /db_xref="GeneID:343990" /db_xref="HGNC:HGNC:33454" CDS 307..2130 /gene="C2orf55" /codon_start=1 /product="C2orf55 protein" /protein_id="AAH68277.1" /db_xref="GeneID:343990" /db_xref="HGNC:HGNC:33454" /translation="MDIKLREAAEGLGEDSTGKKKSKFKTFKKFFGKKKRKESPSSTG SSTWKQSQTRNEVIAIESGPVGYDSEDELEESRGTLGSRALSHDSIFIPESGQDATRP VRVFSQENVCDRIKALQLKIQCNVKMGPPPPPGGLPAKRGEDAGMSSEDDGLPRSPPE MSLLHDVGPGTTIKVSVVSPDHVSDSTVSARISDNSLAPVADFSYPAESSSCLDNSAA KHKLQVKPRNQRSSKMRRLSSRAQSESLSDLTCTPEEEENEEKPLLEVSPEERPSSGQ QDVAPDRGPEPGPPAPLPPPGGARARRARLQHSSALTASVEEGGVPGEDPSSRPATPE LAEPESAPTLRVEPPSPPEGPPNPGPDGGKQDGEAPPAGPCAPATDKAEEVVCAPEDV ASPFPTAIPEGDTTPPETDPAATSEAPSARDGPERSVPKEAEPTPPVLPDEEKGPPGP APEPEREAETEPERGAGTEPERIGTEPSTAPAPSPPAPKSCLKHRPAGRQRGHRRVPA ACRCGVSPGGARPRFPRRRGRRPGAPQGRASRGATGGRREGGARAEGGEGRCRAARRE EVLGVLVPSAASSGRLPPAGTGQRPPAPREERPGLEERGGS" BASE COUNT 877 a 1215 c 1222 g 566 t ORIGIN 1 gagcgaagcc ggcgcgcctg cagctgggag ctgggagctg ggagcgcgcc gggcgcaggg 61 ccgggccggc cgcgggaggg tagtgtcagc gcccgcgtcc agctcttcgg ccgcagaccc 121 gggctgtctg gaggccgcgc ggccacctgc tgcgtcgccc cggctttggg ctggggctag 181 acgcgcaccg cggcgggagc agccccggct cgccgcaccc cgcggaaggt gcccttctct 241 gcgcgtctcg ccgagcccgg gccacgctcc tgtcccagcg agcttgacat gatttccaca 301 agggtgatgg acattaagct tcgggaggct gcagaaggcc ttggggagga cagcacagga 361 aagaaaaaat ctaaattcaa aacttttaag aagttttttg ggaagaagaa gagaaaagaa 421 tcgccgtcgt ccacaggaag tagcacctgg aaacaaagtc agacgaggaa tgaggtcatt 481 gccatcgaat ccgggccagt gggctacgac tccgaggatg agctggagga gtcgaggggc 541 acgctgggca gccgggccct ttctcacgac agtattttca ttcctgagtc cggacaggac 601 gctactcggc ctgtgcgggt gttttcccaa gaaaatgtgt gtgatcggat taaagctctg 661 cagttaaaaa tacagtgtaa tgtgaaaatg gggccaccac ctcctccagg ggggcttcct 721 gccaagcggg gagaggatgc cggcatgagc tctgaggacg acgggctgcc caggagcccc 781 ccagagatgt ctctgctgca cgacgtgggt cctggtacca ccataaaggt ctctgtcgtg 841 tctccagacc acgtgagcga cagcaccgtc tctgcccgga tctcagacaa cagcctggca 901 ccagtggctg acttcagtta tcctgcagaa tcctcctcct gcctggacaa ctctgcagct 961 aagcacaagc tccaggtcaa gccccgcaac cagcggtcga gtaagatgag gcggctctca 1021 tcgcgcgctc agtctgaatc cctgagcgac ctgacgtgca ccccagagga ggaggaaaac 1081 gaggagaagc cacttttgga agtcagccca gaagagcgcc ccagctctgg gcagcaggac 1141 gtggcgccag acagaggccc tgagcctggg ccaccggcgc ccttgccgcc acccggaggg 1201 gcccgtgcca gacgcgcccg cctgcagcac tcctccgcgc tcacggccag cgtggaggag 1261 gggggcgtcc ccggggagga cccctcaagc cgcccggcca ccccggagct cgccgagccc 1321 gagtcggccc ccactctccg cgtggagccc ccgtccccgc cggagggccc cccgaatccc 1381 ggtcccgacg gcggaaagca ggatggggag gcgccccccg caggcccgtg tgccccggcc 1441 acggacaagg cggaggaggt ggtctgtgct cccgaagacg tcgcgagccc gtttcccacc 1501 gccatccctg agggggacac gactcccccc gagactgacc ccgccgccac ctcagaggcg 1561 ccctctgctc gcgacgggcc agaacgcagt gtcccgaagg aagcggagcc gacgccgccc 1621 gtgctcccgg atgaggagaa ggggccccca gggccggcgc ctgagcccga gagagaagcg 1681 gagacggagc ccgagagagg agcggggacc gagcccgaga gaattgggac cgagccctcc 1741 acggcgcccg ccccgagccc gccggcgccc aagagctgcc tgaaacaccg gcccgcgggc 1801 cgccagcgag ggcaccgccg cgtccccgcc gcttgccgct gcggagtctc ccccggtgga 1861 gcccggcccc ggttccctcg acgcagaggc cgccgccccg gagcgcccca aggccgagcg 1921 agccgaggcg ccaccggcgg gcgccgagag ggcggcgcca gagcggaagg cggagagggg 1981 cggtgccgag ctgcgaggcg cgaagaagtt ctcggtgtcc tcgtgccgag cgcggcctcg 2041 tccgggcgtc tcccgcccgc tggaacgggc cagcggccgc ctgcccctcg cgaggagcgg 2101 cccggtctgg aggagcgagg cggctcttga cgacctccag ggtctccccg agccccagca 2161 cgcgaaacct ggccctcgga agctggcgga gcgcggccct caggactcgg gggacagggc 2221 ggccagcccg gccgggccgc gcaagagccc tcaggaggcg gccgccgcgc ccggcacgag 2281 agagccctgc ccagccgccc aggagccggc cccgagtgag gacagaaacc ccttccccgt 2341 caagctccgg tccacctccc tctcgctcaa atacagggat ggcgcctctc aggaggtgaa 2401 gggtgtgaag aggtacagtg ccgaggtccg gttagaaagg tcgctgaccg tgctcccgaa 2461 ggagggagaa gtgtcccctc gggacggccc ccgcccttcg aggcaccagg gcccccagcg 2521 accaaggaaa ggggaaggcc cggccccccg agccgctcag ctccaagccg cccctgcccc 2581 ggaagccgct tctgcagagc ttcacgctcc cgcaccagcc cgcgcccccc gacgccggcc 2641 cgggagagcg ggaacccagg aaggagccca ggacggcgga gaaaaggccg ctgcgcaggg 2701 gagctgaaaa gagtctgccg cctgcagcaa cagggcctgg agctgatggg cagcctgcgc 2761 caccctggat caccgtcact cggcagaagc ggagggggac cttggaccag ccacccaacc 2821 aggaagacaa gcctggggca cggaccctga agtctgaacc aggaaagcaa gccaaggtgc 2881 ccgagagagg ccaggagcct gtgaagcaag ctgactttgt tcgcagcaag tctttcctga 2941 taacccctgt gaagcccgct gtggaccgga agcagggggc aaagctcaac ttcaaggagg 3001 ggctgcaaag aggaatctca ttgtcccatc agaacttggc tcagtctgca gtgatgatgg 3061 agaaggaact gcatcagctg aagagagcca gttatgccag tacagatcag ccatcctgga 3121 tggaacttgc cagaaagaaa tctcaagctt ggagtgacat gccccagatt ataaaatagg 3181 tgggcagtgt gctgataaag catgtccact accctgacaa gccacttagt taaaaactgc 3241 cagtgtattg tggcaaacaa actgtgaaac ttaaagattg attttatcat caagttatga 3301 cgaacttggg gaagaggaag gaaccaggca aaacaaagag gataaacaca cagccatact 3361 cctgggccag agggcccaga aacaagaaca acattgaaaa agtccaggaa ccagttcctg 3421 tgcccaaagg tacgaatgtg tcttttcgaa ttcccttgat aaagaagcct cagacaagga 3481 agaaaataga aatgaaattg gacacataaa taggacaccc agcaaaggcc agaagagaag 3541 cccttctagg agaagggaca tctgtgcttc cagctgagat cagcccatgt ctctggtcgc 3601 tctcttgcct gtggatcctg tcttctttca tgtttactac gaggcatgac attcatggca 3661 aaacagggat gccgtttcca agagcagcta taaaacaatc tgttttccta aagacagcca 3721 ctctgagaag gagatgaagg aacacggcag ggttcatcaa ttcatagact gtttccaaaa 3781 ataattttta aacttttcca ctaggcatct gtgtctttaa ccactgcaca atgcattgcc 3841 tgtttaataa aaggtttcaa acatgaaaaa aaaaaaaaaa //