LOCUS BC067798 2165 bp mRNA linear HUM 26-JUN-2007
DEFINITION Homo sapiens spastic paraplegia 11 (autosomal recessive), mRNA
(cDNA clone IMAGE:5270747), partial cds.
ACCESSION BC067798
VERSION BC067798.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2165)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2165)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (19-MAR-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 167 Row: n Column: 6.
FEATURES Location/Qualifiers
source 1..2165
/db_xref="H-InvDB:HIT000262766"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5270747"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene <1..2165
/gene="SPG11"
/db_xref="GeneID:80208"
/db_xref="HGNC:HGNC:11226"
/db_xref="MIM:610844"
CDS <1..1725
/gene="SPG11"
/codon_start=1
/product="SPG11 protein"
/protein_id="AAH67798.1"
/db_xref="GeneID:80208"
/db_xref="HGNC:HGNC:11226"
/db_xref="MIM:610844"
/translation="LDWKEQESLNFLIGRLLDDGCVHEASRVCRYFHFYNPDVALVLH
CRALASGEASMEDLHPEIHALLQSAELLEEEAPDIPLRRVHSTSSLDSQKFVTVPSSN
EVVTNLEVLTSKCLHGKNYCRQVLCLYDLAKELGCSYTDVAAQDGEAMLRKILASQQP
DRCKRAQAFISTQGLKPDTVAELVAEEVTRELLTSSQGTGHKQMFNPTEESQTFLQLT
TLCQDRTLVGMKLLDKISSVPHGELSCTTELLILAHHCFTLTCHMEGIIRVLQAAHML
TDNHLAPSEEYGLVVRLLTGIGRYNEMTYIFDLLHKKHYFEVLMRKKLDPSGTLKTAL
LDYIKRCRPGDSEKHNMIALCFSMCREIGENHEAAARIQLKLIESQPWEDSLKDGHQL
KQLLLKALTLMLDAAESYAKDSCVRQAQHCQRLTKLITLQIHFLNTGQNTMLINLGRH
KLMDCILALPRFYQASIVAEAYDFVPDWAEILYQQVILKGDFNYLEEFKQQRLLKSSI
FEEISKKYKQHQPTDMVMENLKKLLTYCEDVYLYYKLAYEHKFYEIVNVLLKDPQTGC
CLKDMLAG"
BASE COUNT 625 a 472 c 507 g 561 t
ORIGIN
1 ttggattgga aagagcagga gtcactaaac tttttgattg ggcgcctact ggatgatggc
61 tgtgtgcatg aagcaagtag agtatgccgg tattttcatt tttataatcc agatgtcgcc
121 ttggtattgc actgcagagc actggcctca ggggaagcta gtatggagga tctgcaccca
181 gagatccatg ctctcctaca aagtgctgag ctgcttgagg aagaagcacc cgacattccc
241 ctaaggagag tccacagcac ttcaagtctg gatagtcaga agtttgtgac agtgccctcc
301 agtaatgaag tggtaactaa cctggaagtg ctgacaagca aatgcctcca tgggaagaac
361 tactgtcgac aggtcctctg tctgtatgat cttgccaagg agttgggctg ttcctacaca
421 gatgttgctg ctcaggatgg tgaagccatg ctccggaaaa tcttggcctc tcagcagcct
481 gaccgatgca aacgagccca ggccttcatc agcacacagg gccttaagcc agatactgtg
541 gctgaactcg tggcagaaga ggtgacacgg gagctgctta cttcatcaca gggaacagga
601 cataagcaga tgttcaaccc aacagaggaa agccagacat ttcttcagct gaccactctg
661 tgtcaagacc gcacattggt aggcatgaag ttgttggata agatttcctc cgttccccat
721 ggggaactgt cttgcaccac agagctcctg atcctggccc atcattgctt caccctgacg
781 tgccacatgg agggcatcat ccgagtccta caggccgccc acatgctcac agataaccac
841 ctggccccca gtgaggagta tgggctggtg gtacggctcc tcactggcat tggaaggtac
901 aacgagatga catacatatt tgatttgctg cataaaaagc actactttga agtgctaatg
961 aggaagaagt tggatccgag tggtaccctg aaaacagccc tgctggacta catcaaacgc
1021 tgccgtcctg gagacagtga aaagcacaat atgattgccc tgtgcttcag catgtgccgg
1081 gagattggcg agaaccacga ggcagctgcc cgcatccaac tgaaattgat tgagtctcag
1141 ccctgggagg acagcctcaa ggatgggcac cagctgaaac aactgctgct gaaggccctg
1201 actctgatgt tggatgcagc agagagttat gccaaggact cctgtgtgcg acaggcccag
1261 cactgtcagc ggctcaccaa gttgataact ctgcagattc actttctgaa cactggccag
1321 aacacaatgc tcatcaactt gggccgccac aagctgatgg actgtattct ggccctacct
1381 cggttctacc aggcttctat tgtggctgag gcctacgatt ttgttccaga ttgggctgaa
1441 attttatacc agcaagtgat tcttaaagga gactttaatt acttggaaga atttaagcag
1501 caaaggttat taaagtccag tatatttgaa gagatttcca aaaaatataa acaacatcag
1561 cctactgaca tggtcatgga aaacctgaag aaattactca catattgtga agatgtttac
1621 ctgtattaca agttggcata cgaacacaag ttttatgaaa ttgtaaatgt gcttctgaag
1681 gaccctcaga caggttgctg tctaaaggac atgctagcag gttagatgat ttcataggtg
1741 tctgttttct tgtactgtta gcagattctg acagatgtga tgagaagaag aatgcattgg
1801 agatctttgc taaagttgaa caatcccggt actgtaccaa atcagtcctt tgtgggtagt
1861 aggtagcaag taagaaactt ttcaggagga aattcctatt taaaatagat tgattttaga
1921 tgattgttca tccacaccat tttatataga tactagtatt aagatcaaaa gcttcctctt
1981 cctcaggaca gcttctactt tagatgatcc aataatgatt aaagaatacc tgtacatgca
2041 gattccagtt tcaaagaaat ttaattatta tttacacagt taaggaacag gtgatacatt
2101 ttcatttgtt agaaactgat ctttctgtaa taaaatagat tttcaattca aaaaaaaaaa
2161 aaaaa
//