LOCUS BC067361 2909 bp mRNA linear HUM 16-MAR-2004
DEFINITION Homo sapiens SRY (sex determining region Y)-box 12, mRNA (cDNA
clone MGC:71161 IMAGE:6480102), complete cds.
ACCESSION BC067361
VERSION BC067361.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2909)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2909)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (15-MAR-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 50 Row: n Column: 15
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 21264338.
FEATURES Location/Qualifiers
source 1..2909
/db_xref="H-InvDB:HIT000262565"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:71161 IMAGE:6480102"
/tissue_type="Prostate, carcinoma"
/clone_lib="NIH_MGC_40"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2909
/gene="SOX12"
/gene_synonym="SOX22"
/db_xref="GeneID:6666"
/db_xref="MIM:601947"
CDS 261..1208
/gene="SOX12"
/gene_synonym="SOX22"
/codon_start=1
/product="SOX12 protein"
/protein_id="AAH67361.1"
/db_xref="GeneID:6666"
/db_xref="MIM:601947"
/translation="MVQQRGARAKRDGGPPPPGPGPAEEGAREPGWCKTPSGHIKRPM
NAFMVWSQHERRKIMDQWPDMHNAEISKRLGRRWQLLQDSEKIPFVREAERLRLKHMA
DYPDYKYRPRKKSKGAPAKARPRPPGGSGGGSRLKPGPQLPGRGGRRAAGGPLGGGAA
APEDDDEDDDEELLEVRLVETPGRELWRMVPAGRAARGQAERAQGPSGEGAAAAAAAS
PTPSEDEEPEEEEEEAAAAEEGEEETVASGEESLGFLSRLPPGPAGLDCSALDRDPDL
QPPSGTSHFEFPDYCTPEVTEMIAGDWRPSSIADLVFTY"
misc_feature 378..584
/gene="SOX12"
/gene_synonym="SOX22"
/note="HMG_box; Region: HMG (high mobility group) box"
/db_xref="CDD:pfam00505"
BASE COUNT 501 a 1029 c 918 g 461 t
ORIGIN
1 ttcggcacga ggcgggcggg gagcggcgcg cgcgggccgc ggcggagcca gaggctgcag
61 gaagagcccg cgggggcccg gagggtgcga ttcctcggcc cccgcaaaac aatgtgtgtt
121 gtgagccagg acgcaacttg ccggaggcgg cgggggcgcg ccgagcccgc ctgagaccgc
181 gctgacctcc tcccccaccc ccagccgcgg aggatgcgga cggcccccgg cggcgtctag
241 cggccccggg cccaggcgcg atggtgcagc agcggggcgc gagggccaag cgggacggcg
301 ggccgccgcc cccgggaccc gggccggccg aggagggggc gcgcgagccc ggctggtgca
361 agaccccgag cggccacatc aagaggccga tgaacgcatt catggtgtgg tcgcagcacg
421 aacggcggaa gatcatggac cagtggcccg acatgcacaa cgccgagatc tccaagcgcc
481 tgggccgccg ctggcagctg ctgcaggact cggagaagat cccgttcgtg cgggaggcgg
541 agcggctgcg gctcaagcac atggcggatt acccggacta caagtaccgg ccgcgcaaaa
601 agagcaaggg ggcgcccgcc aaggcgcggc cccgcccccc cggtggtagc ggtggcggca
661 gccggctcaa gcccgggccg cagctgcctg gccgcggggg ccgccgagca gcgggagggc
721 ctttgggggg cggggcggcg gcgcccgagg acgacgatga agacgacgac gaggagctgc
781 tggaagtgcg cctggtcgag accccggggc gggagctgtg gaggatggtc ccggcgggac
841 gggccgctcg gggacaagcg gagcgcgccc aagggccgtc gggcgagggg gcggccgccg
901 ccgccgccgc ctccccgaca ccgtcggagg acgaggagcc ggaggaagag gaggaggagg
961 cggcagcggc tgaggaaggt gaagaggaga cggtggcgtc gggggaggag tcgctgggct
1021 ttctgtccag gctgccccct ggcccggccg gcctggactg cagcgccctg gatcgcgacc
1081 cggacctgca gcctccctcg ggcacgtcgc acttcgagtt cccggactac tgcacccccg
1141 aggttaccga gatgatcgcg ggggactggc gcccgtctag catcgcagac ctggttttca
1201 cctactgagc ccaccgtcag cggggcgcgc acgcccccaa accagctgtt tacatacagg
1261 aatcaggtat tggggcccct cggaggccga ggctggcacc ccatctcccg cgcagcctgc
1321 cccctcctgg acgtgcccat cccccctcag atccagacat gcccctcccc cgcagacaca
1381 ccccaaggca gcccaacccc caccccttcc ccgacaccca agcccctccc cacgtcgccc
1441 cctcctgcac agccaccagc agccagcccc ctccgataca cctcccgtcc tctcctacag
1501 acctgcaccc ctcccccctt ttgcacacgc ccctcctcgt ggccggagga cccgccccct
1561 cctttgctcc ggaatctctc ctccctcgcc cggcccgcct tctctgggtt aggggggcga
1621 tgcggccggg tggcaacgca cgcgcctcct gcgcccctcc cttccctggg gggaggggcg
1681 cacccctttt atccccggag cgctagggcc cgcccctccg ctggggccca cccccttcgt
1741 gcgcatgctt aatgcttctg gggaggaggg ggctggtccc agcggagccg cactcttcgc
1801 ccgctccggg caaaagcggg ggcgagtgta gagcgatcct gggaaatcct ttgatccggg
1861 agccctaggt ttcctctcca gccaacgggg cgtcgctgcc ttaatgggag gagcactcgg
1921 aagggttggt ttgggcctga aactctccca agtggcatag ccccttttcc ggtatggggt
1981 ctcctacacc cacgcgcacc acctctccgg tcgcgtggct gcctctacag cctacctata
2041 cgtccctttt tccccccaac tgggaattga gaggtaaggt ctttctctgg aaatccagca
2101 gtagaggaag ggaccaccca agaaaactaa aaaccaaggc accttaccag tctgtctggg
2161 gacaggatcc ctgctgcacc ttccccaccc cctcctggga agtgccccct cacctcaggg
2221 cacccgcaac ctgggctcct ccctgagcgc accggccctt cctgtcaccc aggtccaccc
2281 tcagtactca agctgcagta tacagcggga aaaactgagg cactttggtg ctaggggttt
2341 gggactgagg cgtggagagc agatgtgatg gcaggaagac tctcgctttt aaacatctgg
2401 tttgggagag accatcgact tggccagtga gactgagaat ggattccgag tagtgatggg
2461 ccgtttgcac ctcggttttt ccacgtgaga aatggggaga acgctgctgt taggaggaag
2521 ttgtgtccag ttcagggtgc cctcgggagc cctgtccctg ttgctgtggc ccctctcacg
2581 ccgccatctc tctgccccgc cccgcccctc cggcctcccc acacccccct tgccctcact
2641 acctgtatct caccggcgtg tgttcaccct cccgggtggc tcacacactc tcattcacac
2701 acacaaatct caggaacaaa cggtcccaga gtcctccgga cccctgccca gggtctctgc
2761 aggtctctgc cccacgcgtt cccgtcgctg acaaagccac cagctgcctc ctttaagctt
2821 ggtgctccgg ctctgggcct ttcttgcgct ctattttttt tttttttttt tttaagaaaa
2881 acaacaacaa caaaaaaaaa aaaaaaaaa
//