LOCUS BC066942 1849 bp mRNA linear HUM 28-JUL-2005
DEFINITION Homo sapiens PR domain containing 5, mRNA (cDNA clone
IMAGE:4375822), complete cds.
ACCESSION BC066942
VERSION BC066942.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1849)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1849)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-MAR-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 167 Row: b Column: 17
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 41349475
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1849
/db_xref="H-InvDB:HIT000262363"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4375822"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..1849
/gene="PRDM5"
/gene_synonym="PFM2"
/db_xref="GeneID:11107"
CDS 263..598
/gene="PRDM5"
/gene_synonym="PFM2"
/codon_start=1
/product="PRDM5 protein"
/protein_id="AAH66942.1"
/db_xref="GeneID:11107"
/translation="MLGMYVPDRFSLKSSRVQDGMGLYTARRVRKGEKFGPFAGEKRM
PEDLDENMDYRLMWEVRGSKGEVLYILDATNPRHSNWLRFVHEAPSQEQKNLAAIQDK
NLGPAEWRG"
BASE COUNT 497 a 432 c 494 g 426 t
ORIGIN
1 gcggccaggc ccgcgccccc cgcgcccccg cagcaggaat ggcaggaacg gatccgggcc
61 gagcccgacc cgggacgagg aggggctgag ccgcggggga tcctggaatc ggcagggagg
121 tggggattct gggaggaaaa ctccatttcc tccttccctg ccggtttctc ccctctaccc
181 tggcacccca aatttcgatg tgccgcctgc cgggcgctaa gcgccggtgt tgagagaggc
241 ggcggccgcc gcgcccggga aaatgctggg catgtacgtg ccggacaggt tctccctgaa
301 gtcctcccgg gttcaggacg gcatggggct ctacacggcc cgcagagtgc gaaagggtga
361 aaagttcgga ccctttgctg gagagaagag aatgcctgaa gacttggatg aaaatatgga
421 ttacaggttg atgtgggagg ttcgtgggag taagggagaa gttttgtaca ttttggatgc
481 taccaaccca cggcactcca actggcttcg cttcgttcat gaggcaccat ctcaggagca
541 gaagaacttg gctgccattc aagacaagaa tttgggaccc gccgaatggc gaggctaaaa
601 gagctgtaac acagacaaga ctgagacctg ctccttgctt gccacattgc gagtgaagag
661 aaggagagaa gagctgcagc ctttcaggga tcccagacct gggagctccc caagccaggg
721 ctgtgactcc ttctttgggg tgctgcagtt cctggtgtct ccgagcttct ggatgccact
781 gtgttccctg gtgtcagctg tggaagctac ttgcggtgtg cctgtcacag ctgcagcctg
841 gcagagagct ggcacctgtg ctggcacctg gagctgccca cccttctgca gcagccggca
901 tatctgactg tgcattggcc agaccccaca ctcactctca caccccttgc cgctccatgc
961 agtctccctt ggcaggtgtg gaatccaggc cattagtgtg agctgaacac agcctgccag
1021 gtcgagtgag cagaatgagc tcagtgggct gaagcaaaaa tttgggcaaa ggcacgactg
1081 gccacagagg tttccagcca gaaaagcaac accccaaaga tcccataata ataggagtgc
1141 aaaacctgtt gtaaactgtg catgccaggg atctaggttg tgtgttcctt atgagaatct
1201 agctaatgcc tggtgatctg aggtggaaca gttttatccc aaaaccatcc ccagccccat
1261 ccctgtccat ggaaaaactg tcttccacaa aacctgttcc tggtgccaaa aaggttgggc
1321 actgctattc tataccgctg taggatgact atagttaaca ataatatata gtttcaaaaa
1381 gctagaagga agacattgaa tgttcccaac acaaagaaat gatacatgtt tgagatgatg
1441 gatatgctga ttatcttgat ctgatcacta tacatgatat gtattgtaac atcactaggt
1501 accccatgaa tatgtacaat tatgtgtcaa gataaataag taataaaata aaaagcttta
1561 tcttattccc caaaaaaaga cagcttgagg aaaggaaaaa ggaagattac tagcagagtt
1621 gtaggctatt gtctatggta ctttactgca tgaggaaggt acagaggctg aatggaagag
1681 gggttgtaaa attggagtat gggctttcct ttcacatgga gctttgttta acagaagtct
1741 agaaagtaga tataagaatc attatcatgg ttagtttatg tcaaaactat acatactgtc
1801 ttattatact taattaaatg ggtaatcatt tgagaaaaaa aaaaaaaaa
//