LOCUS BC064644 2140 bp mRNA linear HUM 19-JUN-2006
DEFINITION Homo sapiens syntaxin 1A (brain), mRNA (cDNA clone MGC:70785
IMAGE:5769528), complete cds.
ACCESSION BC064644
VERSION BC064644.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2140)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2140)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (22-DEC-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 139 Row: p Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4759181.
FEATURES Location/Qualifiers
source 1..2140
/db_xref="H-InvDB:HIT000261563"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:70785 IMAGE:5769528"
/tissue_type="Brain, fetal, whole pooled"
/clone_lib="NIH_MGC_121"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2140
/gene="STX1A"
/gene_synonym="HPC-1"
/gene_synonym="p35-1"
/db_xref="GeneID:6804"
/db_xref="HGNC:HGNC:11433"
/db_xref="MIM:186590"
CDS 28..894
/gene="STX1A"
/gene_synonym="HPC-1"
/gene_synonym="p35-1"
/codon_start=1
/product="syntaxin 1A (brain)"
/protein_id="AAH64644.1"
/db_xref="GeneID:6804"
/db_xref="HGNC:HGNC:11433"
/db_xref="MIM:186590"
/translation="MKDRTQELRTAKDSDDDDDVAVTVDRDRFMDEFFEQVEEIRGFI
DKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQ
EEGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQRQLEITGRTT
TSEELEDMLESGNPAIFASGIIMDSSISKQALSEIETRHSEIIKLENSIRELHDMFMD
MAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIMIIICCVILG
IVIASTVGGIFA"
BASE COUNT 480 a 647 c 611 g 402 t
ORIGIN
1 gccggcgccg ctgccactcc cgggagcatg aaggaccgaa cccaggagct ccgcacggcc
61 aaggacagcg atgatgatga tgatgtcgct gtcaccgtgg accgagaccg cttcatggat
121 gagttctttg agcaggtgga ggagattcga ggcttcattg acaagatcgc agagaacgtg
181 gaggaggtga agcggaagca cagtgccatc ctggcatccc ccaaccccga tgagaagacg
241 aaggaggagc tggaagaact catgtccgac ataaagaaga cagcaaacaa agttcgttcc
301 aagttaaaga gcatcgagca gtccatcgag caagaggaag gcctgaaccg ctcctccgct
361 gacctgagga tccggaagac acagcactcc acgctgtcca gaaagtttgt ggaggtcatg
421 tcggagtaca acgccacgca gtccgactac cgcgagcgct gcaaaggccg catccagagg
481 cagctggaga tcaccggcag gaccacgacc agtgaggagc tggaggacat gctggagagt
541 gggaaccccg ccatctttgc ctctgggatc atcatggact ccagcatctc gaagcaggct
601 ctgagcgaga ttgagacgcg gcacagtgag atcatcaagc tggagaacag catccgtgag
661 ctacacgaca tgttcatgga catggccatg ctcgtggaga gccagggaga gatgattgac
721 aggatcgagt acaatgtgga acacgcggta gactatgtgg agagggccgt gtctgacacc
781 aagaaggccg tcaagtacca gagcaaggcg cgccggaaga aaatcatgat catcatctgc
841 tgtgtgatcc tgggcatcgt catcgcctcc actgttgggg gcatcttcgc ctagaagcca
901 cccaaactgc cactccactc caggtgggcc actccaagga ggccctggct gctgccacct
961 ggctgggctg ccctcccaac ccccgcctct ggctcagagc accctccctc ccggccccca
1021 tgctcccttc tctgccatgg gccctccgtc cccgccccgt gtcgtgtgca tgatctctgt
1081 gagtgtgcgt ctgtacggga agaggcagag ggaggcagcc agcggggcgt gatgcagtgt
1141 gcacagcgag gagcagaccc aggcagggcc gccagggtga cacaggccac ccttccttgc
1201 cttcagtaac tcggtgggcc caggttctgc tcttccctgg ggaccctaac ctcccctcca
1261 gctgacctgc cctgtcctct ccagctgtcc ccacaagcag agccctgagg ggtggggacc
1321 agctggccac atggtgctgc ttttcaggtt aggggagagg tggccctgag ggacagccca
1381 gctctgagtc tcagtcgctg atcactgcca gggaggctca ggctgccatg gctccaggct
1441 ccctcccctg cctaggggca aagtccatcg ggtcctgggc ctcagcttcc cttcccacat
1501 tcctccggcc ccaggagcaa ccccttgggc taggtctgac cccaggtgtc cctctggaag
1561 gggctggctg gtgccctatt tccagccacc ccagcagcta gggaggcaaa gcaggctgca
1621 gtcagtccct caagccagcg ttgcatgttt gggatggtgg ctcctgttgt cttgcgctct
1681 gggaagtcag atgtcatttc aggcctgcag tctcatcctg cccttgccat cctcccatcg
1741 atgtgccacg tgggtgtcac gtgtcccaga tgcagtattc ggcagccagc cggggagggc
1801 tacctcctcc tcctcaccac cttggggctt ctcatgggaa atgtgccccc gccccaggac
1861 cctctccctt gtggacaggc agggagatgc atgcgagtgc atgcagcagg ggatggggcc
1921 gtgtccgtgt gccccaccct ccctcggctt tactcctgcc cagtgactgt gaccactgtc
1981 cgtgttgcct tcttgaacag cgattccccc caaccccttc accaaaggtc ttggtacaac
2041 cagctgccca ttttgtgaaa tttttatgta gaataaacat ttgtatctgt aaaaaaaaaa
2101 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
//