LOCUS BC064406 1041 bp mRNA linear HUM 30-DEC-2006
DEFINITION Homo sapiens vacuolar protein sorting 16 homolog (S. cerevisiae),
mRNA (cDNA clone IMAGE:5573201), partial cds.
ACCESSION BC064406
VERSION BC064406.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1041)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1041)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (15-DEC-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 139 Row: c Column: 22
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 18450367.
FEATURES Location/Qualifiers
source 1..1041
/db_xref="H-InvDB:HIT000261369"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5573201"
/tissue_type="Duodenum, adenocarcinoma"
/clone_lib="NIH_MGC_88"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..1041
/gene="VPS16"
/gene_synonym="hVPS16"
/db_xref="GeneID:64601"
/db_xref="HGNC:HGNC:14584"
/db_xref="MIM:608550"
CDS <1..854
/gene="VPS16"
/gene_synonym="hVPS16"
/codon_start=3
/product="VPS16 protein"
/protein_id="AAH64406.1"
/db_xref="GeneID:64601"
/db_xref="HGNC:HGNC:14584"
/db_xref="MIM:608550"
/translation="RSKLALSKAIESGDTDLVFTVLLHLKNELNRGDFFMTLRNQPMA
LSLYRQFCKHQELETLKDLYNQDDNHQELGSFHIRASYAAEERIEGRVAALQTAADAF
YKAKNEFAAKATEDQMRLLRLQRRLEDELGGQFLDLSLHDTVTTLILGGHNKRAEQLA
RDFRIPDKRLWWLKLTALADLEDWEELEKFSKSKKSPIGYLPFVEICMKQHNKYEAKK
YASRVGPEQKVKALLLVGDVAQAADVAIEHRNEAELSLVLSHCTGATDGATADKIQRA
RAQAQKK"
BASE COUNT 289 a 260 c 291 g 201 t
ORIGIN
1 agaggagcaa actggcacta agcaaggcca tcgagagcgg ggacactgac ctggtgttca
61 cggtgttgct gcacctgaag aacgagctga accgaggaga ttttttcatg acccttcgga
121 atcagcccat ggccctcagt ttgtaccgac agttctgtaa gcatcaggag ctagagacgc
181 tgaaggacct ttacaatcag gatgacaatc accaggaatt gggcagcttc cacatccgag
241 ccagctatgc tgcagaagag cgtattgagg ggcgagtagc agctctgcag acagccgccg
301 atgccttcta caaggccaag aatgagtttg cagccaaggc tacagaggat caaatgcggc
361 tcctacggct gcagcggcgc ctagaagacg agctgggggg ccagttccta gacctgtctc
421 tacatgacac agttaccacc ctcattcttg gcggtcacaa caagcgtgca gagcagctgg
481 cacgtgactt ccgcatccct gacaagaggc tctggtggct gaagctgact gccctggcag
541 atttggaaga ttgggaagag ctagagaagt tttccaagag caagaaatca cccattggct
601 acctgccttt tgtggagatc tgcatgaaac aacataacaa atacgaagcc aagaagtatg
661 cttcccgcgt gggtcccgag cagaaggtca aggctttgct tcttgttggc gatgtggctc
721 aggctgcaga tgtggccatc gaacaccgga atgaggctga gctgagcctc gtattgtccc
781 actgcacggg agccacagat ggggccacag ctgacaagat tcaacgggcc agggcacaag
841 cccagaagaa gtgaggagtc catcctgtac atctcaagca aggggttcct cccctagcac
901 ctgggcttgg cagaagggcc atagttcatc cagctcctcc cctagagcaa tgctgaggag
961 cgggggcatg gtagcagggc tgtctggttt taaataaagt tggaacactt caaaaaaaaa
1021 aaaaaaaaaa aaaaaaaaaa a
//