LOCUS BC063261 6757 bp mRNA linear ROD 18-MAR-2009
DEFINITION Mus musculus small nuclear ribonucleoprotein 200 (U5), mRNA (cDNA
clone MGC:67133 IMAGE:6408607), complete cds.
ACCESSION BC063261
VERSION BC063261.1
KEYWORDS MGC.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 6757)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 6757)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-DEC-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Dr. Jim Lin, University of Iowa
cDNA Library Preparation: M. Bento Soares, University of Iowa
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 125 Row: g Column: 17
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 40018609.
FEATURES Location/Qualifiers
source 1..6757
/organism="Mus musculus"
/mol_type="mRNA"
/strain="C57BL/6"
/db_xref="taxon:10090"
/clone="MGC:67133 IMAGE:6408607"
/tissue_type="Brain, enriched mouse brain 12.5dp"
/clone_lib="NIH_BMAP_FO0"
/lab_host="DH10B"
/note="Vector: pYX-ASC"
gene 1..6757
/gene="Snrnp200"
/gene_synonym="HELIC2"
/gene_synonym="U5-200-KD"
/gene_synonym="U5-200KD"
/db_xref="GeneID:320632"
/db_xref="MGI:MGI:2444401"
CDS 91..6501
/gene="Snrnp200"
/gene_synonym="HELIC2"
/gene_synonym="U5-200-KD"
/gene_synonym="U5-200KD"
/codon_start=1
/product="small nuclear ribonucleoprotein 200 (U5)"
/protein_id="AAH63261.1"
/db_xref="GeneID:320632"
/db_xref="MGI:MGI:2444401"
/translation="MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLV
GKLEGTRMGDKAQRTKPQMQEERRAKRRKRDEDRHDMNKMKGYTLLSEGIDEMVGIIY
KPKTKETRETYEVLLSFIQAALGDQPRDILCGAADEVLAVLKNEKLRDKERRREIDLL
LGQTDDTRYHVLVNLGKKITDYGGDKEIQNMDDNIDETYGVNVQFESDEEEGDEDVYG
EVREEASDDDMEGDEAVVRCTLSANLVASGELMSSKKKDLHPRDIDAFWLQRQLSRFY
DDAIVSQKKADEVLEILKTASDDRECENQLVLLLGFNTFDFIKVLRQHRMMILYCTLL
ASAQSEPEKERIVGKMEADPELSKFLYQLHETEKEDLIREERSRRERVRQSRMDTDLE
TMDLDQGGEALAPRQVLDLEDLVFTQGSHFMANKRCQLPDGSFRRQRKGYEEVHVPAL
KPKPFGSEEQLLPVEKLPKYAQAGFEGFKTLNRIQSKLYRAALETDENLLLCAPTGAG
KTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLATYGITV
AELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIVLDEIHLLHDDR
GPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRP
VPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRD
MCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVE
DLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRA
GRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDMLNAEIVLGNVQNAK
DAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTAALMLDKNNLVKY
DKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSLSSEFKNITVR
EEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMADMVYVTQSA
GRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVVKKIEKK
NFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKVELTI
TPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFEPL
PPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESL
YQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQNSEGRCVY
ITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILS
RRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSL
SNAKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITK
HSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLK
ETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQY
YNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVES
HLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGISHRHLSDH
LSELVEQTLSDLEQSKCISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKV
RGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLS
RMQLSAELQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDS
YLKQLPHFTSEHIKRCTDKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYPN
IELSYEVVDKDSIRSGGPVVVLVQLEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSN
SLISIKRLTLQQKAKVKLDFVAPATGGHNYTLYFMSDAYMGCDQEYKFSVDVKEAETD
SDSD"
BASE COUNT 1751 a 1644 c 1795 g 1567 t
ORIGIN
1 gcgttgtacc tgttgtgcca gggcggttcg ctgaagcggt tcggagcgtg aagaagagtg
61 gaaccctgag ttcccggagc atcagcagcc atggcggatg tgactgcccg cagtttgcag
121 tacgagtaca aggcgaactc aaatcttgtg ctccaagctg accgctctct cattgaccgg
181 acccgccggg atgaaccgac gggagaggtt ctgtccctgg ttgggaagtt ggagggaacc
241 cgaatgggag ataaggctca acggaccaaa ccacagatgc aggaagaaag acgggccaag
301 aggagaaaac gtgatgagga ccggcatgac atgaacaaga tgaaaggcta cacgctgctg
361 tctgagggca ttgatgagat ggtgggcatc atctacaagc ctaagacgaa ggagacccga
421 gagacctacg aggtgctgct cagcttcatc caggctgcgc tgggagatca gcctcgagat
481 attctttgtg gagcagctga tgaagtcctt gctgtgctga agaatgaaaa gcttcgagac
541 aaggagagaa gacgggagat tgacctgctg ctgggtcaga cagatgatac cagataccat
601 gtgctggtaa acctgggcaa gaagatcaca gactacggtg gcgacaagga gatacagaat
661 atggatgaca acattgatga gacttatggt gtgaacgtgc agtttgagtc tgatgaggag
721 gaaggtgatg aagatgtgta tggggaagtc cgagaagaag cttctgatga tgacatggaa
781 ggggacgaag ctgttgtgcg ctgcaccctc tctgctaatc ttgtagcctc aggcgaactg
841 atgagttcta agaagaagga tttgcaccct cgggatatcg atgccttctg gctgcagcga
901 cagctcagtc gtttctatga tgatgccatt gtgtcacaga agaaggcaga tgaggtgttg
961 gagattttga agacagcaag tgatgaccga gaatgtgaga accaactggt tttgctcctt
1021 ggtttcaaca cgtttgactt cattaaagtg ttgcggcagc acaggatgat gattttatac
1081 tgtaccttgt tggccagtgc tcagagtgaa cctgaaaagg agaggatcgt gggaaagatg
1141 gaagctgatc cagagctctc caagttcctc tatcagctcc atgagactga gaaggaggac
1201 ctgatcagag aagaaaggtc ccggagagag agagtccgtc agtcccgaat ggacacagat
1261 ctggaaacca tggatttgga ccagggtgga gaggctctgg ctccaaggca ggttctggat
1321 ttggaggacc ttgtttttac ccaaggaagc cacttcatgg ccaataagcg ctgccagctt
1381 cctgacgggt ccttccgacg ccagcgtaaa ggctatgaag aggtgcatgt gcctgctttg
1441 aagcccaagc cctttggctc agaagaacaa ttgctcccgg tggagaagct gccaaagtat
1501 gcccaggcag gatttgaggg cttcaaaacg ctgaaccgga tccagagtaa gctctaccgt
1561 gctgccctgg agactgatga gaacctgctg ctgtgtgctc ccactggtgc gggcaagacc
1621 aacgtggccc tgatgtgtat gctccgagag atagggaaac acatcaacat ggacggcaca
1681 atcaatgtgg atgacttcaa gatcatctac atagctccca tgcggtccct ggtccaggag
1741 atggtgggca gttttggaaa gcgcctggcc acatatggca tcactgttgc tgagctgact
1801 ggggatcacc agctatgcaa ggaggaaatc agtgccacac agattatcgt ctgcacccct
1861 gagaagtggg acatcatcac acgcaagggc ggggagcgca cctacaccca gctggtgcga
1921 ctcattgtct tggatgagat ccatcttcta catgatgaca gaggtcctgt cttagaagct
1981 ttggtggcca gggccatccg aaacattgag atgacccaag aagatgtccg actcattggt
2041 ctcagtgcta ccctccccaa ctatgaagat gtggccacct ttctgcgagt cgaccctgct
2101 aagggcctct tctactttga taacagcttc cgccccgtgc ctctggaaca aacatatgtg
2161 ggcatcacag agaaaaaagc tatcaaacgt ttccagatca tgaatgaaat agtctatgag
2221 aaaatcatgg aacatgctgg aaaaaatcag gtgctcgtgt ttgtccattc tcgaaaagaa
2281 actgggaaga cagcaagggc aatccgtgac atgtgtctgg agaaggacac tttgggtctg
2341 tttcttcgcg agggttctgc ctccactgaa gtccttcgta cagaagcaga gcagtgcaag
2401 aacttggagc tgaaggatct tttgccctat ggctttgcta ttcatcatgc aggcatgact
2461 agagttgacc gaacacttgt agaagatctt tttgctgaca agcatattca ggttttagtt
2521 tccaccgcaa ctctggcgtg gggtgtaaat cttcctgcac atacagtcat cattaaaggt
2581 acccaagtgt acagtccaga gaaggggcgt tggacagagc tgggagcact ggatatcctg
2641 cagatgctgg gccgtgctgg acggccgcag tatgacacca agggtgaagg catcctcatc
2701 acatcccatg gggagctcca gtactacctc tccctcctca accagcagct gcctatcgag
2761 agccagatgg tctccaagct gcctgacatg ctcaatgcgg aaattgttct gggcaatgtc
2821 cagaatgcaa aggatgcagt gaactggctg ggctatgcct acctatacat ccgaatgctc
2881 cggtccccta ccctctatgg catttctcat gatgacctca agggagatcc cttgctggac
2941 cagcgccgac tcgatcttgt tcacactgct gccttgatgc tggacaagaa caatctggtc
3001 aagtacgaca agaagacagg caacttccag gtgacagaac ttggccggat agcaagtcac
3061 tactatatca ccaatgatac tgtgcagacc tacaaccagc tgctgaagcc tactctgagt
3121 gagattgagc ttttccgagt gttctccttg tcctcagagt tcaagaacat cactgtaaga
3181 gaggaggaga agctggagct gcagaagttg ctggagagag tgcccatccc tgtaaaggag
3241 agcattgagg aacccagcgc taagatcaac gtgcttctcc aagccttcat ctcacagctg
3301 aaactcgaag gctttgcgct gatggctgac atggtgtatg tgacccagtc ggctggccgg
3361 ttgatgcgtg caatcttcga aattgtcctg aaccgaggtt gggcacagct tacagataag
3421 accctgaatc tctgcaagat gattgacaag cgcatgtggc agtccatgtg tcctcttcgc
3481 cagttccgaa aacttcctga ggaagtagtg aagaagattg agaagaaaaa cttccccttt
3541 gagcggctgt atgacttgaa tcataatgag ataggtgaac ttattcgaat gccgaagatg
3601 gggaagacca tccacaagta tgtccatctt ttccccaagt tggagttgtc agtgcacctg
3661 cagcctatta cacgctctac gctgaaagta gagctgacta tcacaccaga tttccagtgg
3721 gatgaaaagg tccatggttc gtcagaggca ttttggattc tggtggagga tgtggacagt
3781 gaggtgattc tgcaccatga atattttctg ctgaaggcca agtatgccca ggatgagcac
3841 ctcatcacgt tctttgttcc agtctttgaa ccactacctc ctcagtactt cattcgagta
3901 gtgtctgatc gctggctctc ttgtgagacg cagctacctg tctccttccg gcatctgatc
3961 ctaccagaga agtacccacc tccaaccgaa ctgttggacc tgcagccatt gcctgtgtct
4021 gctctgagaa acagtgcttt tgagagcctt taccaagata aatttccttt cttcaatccc
4081 atccagactc aagtatttaa taccgtgtac aacagtgatg ataacgtgtt tgtgggggcc
4141 cccacgggca gcgggaagac tatctgcgcg gagtttgcca tccttcggat gctgctgcag
4201 aattctgagg gacgctgtgt ctacattacc cctatggagg ctctggcaga gcaggtatac
4261 atggactggt atgagaagtt tcaggacagg ctcaacaaga aggtagtgct gctgacgggg
4321 gagaccagca cagatctgaa gctcctgggc aaaggcaaca tcatcatcag tacccctgag
4381 aagtgggaca tcctctctcg gaggtggaag cagcgcaaga acgtccagaa cattaacctc
4441 tttgtggtgg atgaggtcca ccttattggg ggcgagaatg ggcctgtctt ggaagtgatc
4501 tgctcccgga tgcgctacat ctcctcccag attgagcggc ccattcgcat tgtggcactt
4561 agctcctcac tctccaatgc caaggatgtg gctcactggc tgggctgcag tgccacctcc
4621 accttcaact tccatcctaa tgtgcgccct gtacctttgg aactgcacat ccagggcttc
4681 aacatcagtc acacacagac tcgcctgctc tctatggcca agcctgtgta ccatgctatc
4741 accaaacact cacccaagaa gcctgtcatc gtttttgtcc catctcgtaa gcagacccgc
4801 ctcactgcaa tagacatcct cactacctgt gcagcagaca tccagcggca gaggttcctg
4861 cactgcaccg agaaggacct gatcccttac ctggagaagc tcagtgacag cacactcaaa
4921 gagaccctgt taaatggggt gggctacctg catgaaggcc tgagccccat ggagaggcgc
4981 ctggtagagc agctcttcag ctccggggct atccaggtgg tggtagcttc tcggagtctc
5041 tgctggggca tgaatgttgc tgctcatcta gtgatcatca tggatactca gtactacaat
5101 ggcaagatcc atgcctatgt ggattacccc atctatgatg tgcttcagat ggtgggccat
5161 gccaaccggc ccctgcagga tgatgagggg cgctgtgtca tcatgtgtca gggctctaaa
5221 aaggattttt tcaaaaaatt tttgtatgag ccattgccag tagagtctca cctggaccac
5281 tgtatgcatg accacttcaa tgctgagatt gtcaccaaga ccattgagaa caagcaggat
5341 gctgtggact acctcacctg gacctttctg tatcgcagaa tgacacagaa ccccaattac
5401 tacaacctgc aggggatatc ccatcgtcat ctgtctgacc acctgtcaga gctggtggag
5461 cagaccctca gtgacctgga gcagtccaaa tgcatcagta ttgaggacga gatggatgtg
5521 gcccctctga acctgggcat gattgctgcc tactattaca taaactacac caccattgag
5581 ctcttcagca tgtctctgaa tgctaaaacc aaggttcgag gacttattga gatcatttcc
5641 aatgcagcag agtatgagaa cattccaatc aggcatcatg aagacaacct cctgcgccag
5701 ttggctcaga aggtccccca caagctgaat aaccccaagt tcaatgatcc acatgtgaag
5761 accaatctgc tgctgcaggc tcacctgtcc cgcatgcagc taagtgctga actacagtca
5821 gacacagagg agatccttag taaggcaatc cggctaattc aggcctgtgt ggatgtactc
5881 tccagcaatg ggtggcttag tcctgctctg gcagccatgg aactggccca gatggtcacc
5941 caagccatgt ggtctaagga ctcttacctg aagcagctgc cacacttcac ctcagagcat
6001 atcaaacgtt gcacagataa gggagtggag agtgtttttg acatcatgga gatggaggat
6061 gaagaacgga atgcattgct tcagttgact gacagccaga ttgcagatgt ggcccgcttc
6121 tgtaaccgct acccgaatat tgaactgtcc tatgaagtgg tggataaaga cagcatccgc
6181 agtggcggac cagttgtggt gctagtgcaa ctggagcgag aggaggaagt cacgggccca
6241 gttattgcac ctctcttccc acagaaacgt gaagagggct ggtgggttgt gattggagac
6301 gccaagtcca acagcctcat ctccatcaag aggctgaccc tgcagcagaa agccaaggtg
6361 aagctagact ttgtggcccc agccacaggt ggccacaact ataccctgta cttcatgagt
6421 gacgcataca tgggctgtga ccaggagtat aagttcagtg tggatgtgaa agaagctgag
6481 acagacagtg attcagattg agtctgaggc actgaacctg aaaacaggaa tgtggactag
6541 gtctgtcagg ctgaggtctg gccattcagg ccgctgctgt ccccagtcca catccagtta
6601 ctgtcccact ttggacctta gttcaaggtc tgggtcttgt attttcaagt gtcatgtcaa
6661 gcatgaactg tacaatattt ggaggcatgg ttttctagtt ccttgagtca gacattctaa
6721 taaataattt gaaaaaacta aaaaaaaaaa aaaaaaa
//