LOCUS BC060977 1200 bp mRNA linear ROD 15-JUL-2006
DEFINITION Mus musculus CD48 antigen, mRNA (cDNA clone MGC:74071
IMAGE:30296173), complete cds.
ACCESSION BC060977
VERSION BC060977.1
KEYWORDS MGC.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1200)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1200)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-NOV-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Dr. Michael Brownstein
cDNA Library Preparation: Michael Brownstein / Ted Usdin
Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 53 Row: l Column: 3
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 24475614.
FEATURES Location/Qualifiers
source 1..1200
/organism="Mus musculus"
/mol_type="mRNA"
/db_xref="taxon:10090"
/clone="MGC:74071 IMAGE:30296173"
/tissue_type="Lung and heart, mouse"
/clone_lib="NIH_MGC_178"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..1200
/gene="Cd48"
/gene_synonym="BCM1"
/gene_synonym="BLAST"
/gene_synonym="BLAST-1"
/gene_synonym="BLAST1"
/gene_synonym="MEM-102"
/gene_synonym="Sgp-60"
/gene_synonym="SLAMF2"
/db_xref="GeneID:12506"
/db_xref="MGI:MGI:88339"
CDS 68..790
/gene="Cd48"
/gene_synonym="BCM1"
/gene_synonym="BLAST"
/gene_synonym="BLAST-1"
/gene_synonym="BLAST1"
/gene_synonym="MEM-102"
/gene_synonym="Sgp-60"
/gene_synonym="SLAMF2"
/codon_start=1
/product="CD48 antigen"
/protein_id="AAH60977.1"
/db_xref="GeneID:12506"
/db_xref="MGI:MGI:88339"
/translation="MCFIRQGWCLVLELLLLPLGTGFQGHSIPDINATTGSNVTLKIH
KDPLGPYKRITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLEENNGALHISNVRKED
KGTYYMRVLRETENELKITLEVFDPVPKPSIEINKTEASTDSCHLRLSCEVKDQHVDY
TWYESSGPFPKKSPGYVLDLIVTPQNKSTFYTCQVSNPVSSKNDTVYFTLPCDLARSS
GVCWTATWLVVTTLIIHRILLT"
BASE COUNT 384 a 265 c 228 g 323 t
ORIGIN
1 gaagggcagg cgccctgact tctcttacag ttgtctccag tgttctgggg aagcttctct
61 aagtattatg tgcttcataa gacagggatg gtgtctggtc ctggaactgc tactgctgcc
121 cttgggaact ggatttcaag gtcattcaat accagatata aatgccacca ccggcagcaa
181 tgtaaccctg aaaatccata aggacccact tggaccatat aaacgtatca cctggcttca
241 tactaaaaat cagaagattt tagagtacaa ctataatagt acaaagacaa tcttcgagtc
301 tgaatttaaa ggcagggttt atcttgaaga aaacaatggt gcacttcata tctctaatgt
361 ccggaaagag gacaaaggta cctactacat gagagtgctg cgtgaaactg agaacgagtt
421 gaagataacc ctggaagtat ttgatcctgt gcccaagcct tccatagaaa tcaataagac
481 tgaagcgtcg actgattcct gtcacctgag gctatcgtgt gaggtaaagg accagcatgt
541 tgactatact tggtatgaga gctcgggacc tttccccaaa aagagtccag gatatgtgct
601 cgatctcatc gtcacaccac agaacaagtc tacattttac acctgccaag tcagcaatcc
661 tgtaagcagc aagaacgaca cagtgtactt cactctacct tgtgatctag ccagatcttc
721 tggagtatgt tggactgcaa cttggctagt ggtcacaaca ctcatcattc acaggatcct
781 gttaacctga caagaactct tctcacccaa gaaggcaact tggaagcaca gagtcttgcc
841 ttcatcccta gcagtgttcc tagccagcga agcaactctg gctctattgg acaaaggaaa
901 atgtgttact gaacgtctgc gagagtttgc atgcatgctc tatgaaacaa gcacaggacc
961 ttgtacagtg ctccaccact gacctgtgtg cccagtcctt tacaaagatt tcaaatcaac
1021 cttttaaaaa ctgtgcataa tatctaattt tatataccct agttgtttcc caacatatat
1081 taaagataaa tgcattcttt ttaccaaaat gtgactatat tattttcatg ttttcatatc
1141 tctttttaaa ataaattctt ttaaaaagca aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
//