LOCUS BC060877 3001 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens protein phosphatase 1D magnesium-dependent, delta
isoform, mRNA (cDNA clone MGC:71835 IMAGE:5260081), complete cds.
ACCESSION BC060877
VERSION BC060877.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3001)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3001)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-NOV-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 133 Row: l Column: 3
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 29558519.
FEATURES Location/Qualifiers
source 1..3001
/db_xref="H-InvDB:HIT000260179"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:71835 IMAGE:5260081"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3001
/gene="PPM1D"
/gene_synonym="PP2C-DELTA"
/gene_synonym="WIP1"
/db_xref="GeneID:8493"
/db_xref="HGNC:HGNC:9277"
/db_xref="MIM:605100"
CDS 233..2050
/gene="PPM1D"
/gene_synonym="PP2C-DELTA"
/gene_synonym="WIP1"
/codon_start=1
/product="protein phosphatase 1D magnesium-dependent,
delta isoform"
/protein_id="AAH60877.1"
/db_xref="GeneID:8493"
/db_xref="HGNC:HGNC:9277"
/db_xref="MIM:605100"
/translation="MAGLYSLGVSVFSDQGGRKYMEDVTQIVVEPEPTAEEKPSPRRS
LSQPLPPRPSPAALPGGEVSGKGPAVAAREARDPLPDAGASPAPSRCCRRRSSVAFFA
VCDGHGGREAAQFAREHLWGFIKKQKGFTSSEPAKVCAAIRKGFLACHLAMWKKLAEW
PKTMTGLPSTSGTTASVVIIRGMKMYVAHVGDSGVVLGIQDDPKDDFVRAVEVTQDHK
PELPKERERIEGLGGSVMNKSGVNRVVWKRPRLTHNGPVRRSTVIDQIPFLAVARALG
DLWSYDFFSGEFVVSPEPDTSVHTLDPQKHKYIILGSDGLWNMIPQQDAISMCQDQEE
KKYLMGEHGQSCAKMLVNRALGRWRQRMLRADNTSAIVICISPEVDNQGNFTNEDELY
LNLTDSPSYNSQETCVMTPSPCSTPPVKSLEEDPWPRVNSKDHIPALVRSNAFSENFL
EVSAEIARENVQGVVIPSKDPEPLEENCAKALTLRIHDSLNNSLPIGLVPTNSTNTVM
DQKNLKMSTPGQMKAQEIERTPPTNFKRTLEESNSGPLMKKHRRNGLSRSSGAQPASL
PTTSQRKNSVKLTMRRRLRGQKKIGNPLLHQHRKTVCVC"
BASE COUNT 824 a 673 c 710 g 794 t
ORIGIN
1 ggggaagcgc agtgcgcagg cgcaactgcc tggctctgct cgctccggcg ctacggccca
61 gctctcgcgg acaagtccag acatcgcgcg cccccccttc tccgggtccg ccccctcccc
121 cttctcggcg tcgtcgaaga taaacaatag ttggccggcg agcgcctagt gtgtctcccg
181 ccgccggatt cggcgggctg cgtgggaccg gcgggatccc ggccagccgg ccatggcggg
241 gctgtactcg ctgggagtga gcgtcttctc cgaccagggc gggaggaagt acatggagga
301 cgttactcaa atcgttgtgg agcccgaacc gacggctgaa gaaaagccct cgccgcggcg
361 gtcgctgtct cagccgttgc ctccgcggcc gtcgccggcc gcccttcccg gcggcgaagt
421 ctcggggaaa ggcccagcgg tggcagcccg agaggctcgc gaccctctcc cggacgccgg
481 ggcctcgccg gcacctagcc gctgctgccg ccgccgttcc tccgtggcct ttttcgccgt
541 gtgcgacggg cacggcgggc gggaggcggc acagtttgcc cgggagcact tgtggggttt
601 catcaagaag cagaagggtt tcacctcgtc cgagccggct aaggtttgcg ctgccatccg
661 caaaggcttt ctcgcttgtc accttgccat gtggaagaaa ctggcggaat ggccaaagac
721 tatgacgggt cttcctagca catcagggac aactgccagt gtggtcatca ttcggggcat
781 gaagatgtat gtagctcacg taggtgactc aggggtggtt cttggaattc aggatgaccc
841 gaaggatgac tttgtcagag ctgtggaggt gacacaggac cataagccag aacttcccaa
901 ggaaagagaa cgaatcgaag gacttggtgg gagtgtaatg aacaagtctg gggtgaatcg
961 tgtagtttgg aaacgacctc gactcactca caatggacct gttagaagga gcacagttat
1021 tgaccagatt ccttttctgg cagtagcaag agcacttggt gatttgtgga gctatgattt
1081 cttcagtggt gaatttgtgg tgtcacctga accagacaca agtgtccaca ctcttgaccc
1141 tcagaagcac aagtatatta tattggggag tgatggactt tggaatatga ttccacaaca
1201 agatgccatc tcaatgtgcc aggaccaaga ggagaaaaaa tacctgatgg gtgagcatgg
1261 acaatcttgt gccaaaatgc ttgtgaatcg agcattgggc cgctggaggc agcgtatgct
1321 ccgagcagat aacactagtg ccatagtaat ctgcatctct ccagaagtgg acaatcaggg
1381 aaactttacc aatgaagatg agttatacct gaacctgact gacagccctt cctataatag
1441 tcaagaaacc tgtgtgatga ctccttcccc atgttctaca ccaccagtca agtcactgga
1501 ggaggatcca tggccaaggg tgaattctaa ggaccatata cctgccctgg ttcgtagcaa
1561 tgccttctca gagaattttt tagaggtttc agctgagata gctcgagaga atgtccaagg
1621 tgtagtcata ccctcaaaag atccagaacc acttgaagaa aattgcgcta aagccctgac
1681 tttaaggata catgattctt tgaataatag ccttccaatt ggccttgtgc ctactaattc
1741 aacaaacact gtcatggacc aaaaaaattt gaagatgtca actcctggcc aaatgaaagc
1801 ccaagaaatt gaaagaaccc ctccaacaaa ctttaaaagg acattagaag agtccaattc
1861 tggccccctg atgaagaagc atagacgaaa tggcttaagt cgaagtagtg gtgctcagcc
1921 tgcaagtctc cccacaacct cacagcgaaa gaactctgtt aaactcacca tgcgacgcag
1981 acttaggggc cagaagaaaa ttggaaatcc tttacttcat caacacagga aaactgtttg
2041 tgtttgctga aatgcatctg ggaaatgagg tttttccaaa cttaggatat aagagggctt
2101 tttaaatttg gtgccgatgt tgaacttttt ttaaggggag aaaattaaaa gaaatataca
2161 gtttgacttt ttggaattca gcagttttat cctggccttg tacttgcttg tattgtaaat
2221 gtggattttg tagatgttag ggtataagtt gctgtaaaat ttgtgtaaat ttgtatccac
2281 acaaattcag tctctgagta cacagtattc agagtctctg atacacagta attgtgacaa
2341 tagggctaaa tgtttaaaga aatcaaaaga atctattaga ttttagaaaa acatttaaac
2401 tttttaaaat acttattaaa aaatttgtat aagccacttg tcttgaaaac tgtgcaactt
2461 tttaaagtaa attattaagc agactggaaa agtgatgtat tttcatagtg acctgtgttt
2521 cacttaatgt ttcttagagc caagtgtctt ttaaacatta ttttttattt ctgatttcat
2581 aattcagaac taaatttttc atagaagtgt tgagccatgc tacagttagt cttgtcccaa
2641 ttaaaatact atgcagtatc tcttacatca gtagcatttt tctaaaacct tagtcatcag
2701 atatgcttac taaatcttca gcatagaagg aagtgtgttt gcctaaaaca atctaaaaca
2761 attcccttct ttttcatccc agaccaatgg cattattagg tcttaaagta gttactccct
2821 tctcgtgttt gcttaaaata tgtgaagttt tccttgctat ttcaataaca gatggtgctg
2881 ctaattccca acatttctta aattatttta tatcatacag ttttcattga ttatatgggt
2941 atatattcat ctaataaatc agtgaactgt tcctcatgtt gcagaaaaaa aaaaaaaaaa
3001 a
//