LOCUS BC060794 2828 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens retinoic acid receptor, beta, mRNA (cDNA clone
MGC:71596 IMAGE:30341884), complete cds.
ACCESSION BC060794
VERSION BC060794.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2828)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2828)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-NOV-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Dr. Stefan Hansson
cDNA Library Preparation: Michael Brownstein / Ted Usdin
Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 133 Row: f Column: 22
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 14916495.
FEATURES Location/Qualifiers
source 1..2828
/db_xref="H-InvDB:HIT000260096"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:71596 IMAGE:30341884"
/tissue_type="Placenta, normal"
/clone_lib="NIH_MGC_147"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..2828
/gene="RARB"
/gene_synonym="HAP"
/gene_synonym="NR1B2"
/gene_synonym="RRB2"
/db_xref="GeneID:5915"
/db_xref="HGNC:HGNC:9865"
/db_xref="MIM:180220"
CDS 152..1498
/gene="RARB"
/gene_synonym="HAP"
/gene_synonym="NR1B2"
/gene_synonym="RRB2"
/codon_start=1
/product="retinoic acid receptor, beta"
/protein_id="AAH60794.1"
/db_xref="GeneID:5915"
/db_xref="HGNC:HGNC:9865"
/db_xref="MIM:180220"
/translation="MFDCMDVLSVSPGQILDFYTASPSSCMLQEKALKACFSGLTQTE
WQHRHTAQSIETQSTSSEELVPSPPSPLPPPRVYKPCFVCQDKSSGYHYGVSACEGCK
GFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKK
ETSKQECTESYEMTAELDDLTEKIRKAHQETFPSLCQLGKYTTNSSADHRVRLDLGLW
DKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDT
MTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQD
LEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLK
MEIPGSMPPLIQEMLENSEGHEPLTPSSSGNTAEHSPSISPSSVENSGVSQSPLVQ"
BASE COUNT 858 a 611 c 557 g 802 t
ORIGIN
1 ataattcatg attcggggct gggaaaaaga ccaacagcct acgtgccaaa aaaggggcag
61 agtttgatgg agttgggtgg acttttctat gccatttgcc tccacaccta gaggataagc
121 acttttgcag acattcagtg caagggagat catgtttgac tgtatggatg ttctgtcagt
181 gagtcctggg caaatcctgg atttctacac tgcgagtccg tcttcctgca tgctccagga
241 gaaagctctc aaagcatgct tcagtggatt gacccaaacc gaatggcagc atcggcacac
301 tgctcaatca attgaaacac agagcaccag ctctgaggaa ctcgtcccaa gccccccatc
361 tccacttcct ccccctcgag tgtacaaacc ctgcttcgtc tgccaggaca aatcatcagg
421 gtaccactat ggggtcagcg cctgtgaggg atgtaagggc tttttccgca gaagtattca
481 gaagaatatg atttacactt gtcaccgaga taagaactgt gttattaata aagtcaccag
541 gaatcgatgc caatactgtc gactccagaa gtgctttgaa gtgggaatgt ccaaagaatc
601 tgtcaggaat gacaggaaca agaaaaagaa ggagacttcg aagcaagaat gcacagagag
661 ctatgaaatg acagctgagt tggacgatct cacagagaag atccgaaaag ctcaccagga
721 aactttccct tcactctgcc agctgggtaa atacaccacg aattccagtg ctgaccatcg
781 agtccgactg gacctgggcc tctgggacaa attcagtgaa ctggccacca agtgcattat
841 taagatcgtg gagtttgcta aacgtctgcc tggtttcact ggcttgacca tcgcagacca
901 aattaccctg ctgaaggccg cctgcctgga catcctgatt cttagaattt gcaccaggta
961 taccccagaa caagacacca tgactttctc agacggcctt accctaaatc gaactcagat
1021 gcacaatgct ggatttggtc ctctgactga ccttgtgttc acctttgcca accagctcct
1081 gcctttggaa atggatgaca cagaaacagg ccttctcagt gccatctgct taatctgtgg
1141 agaccgccag gaccttgagg aaccgacaaa agtagataag ctacaagaac cattgctgga
1201 agcactaaaa atttatatca gaaaaagacg acccagcaag cctcacatgt ttccaaagat
1261 cttaatgaaa atcacagatc tccgtagcat cagtgctaaa ggtgcagagc gtgtaattac
1321 cttgaaaatg gaaattcctg gatcaatgcc acctctcatt caagaaatgc tggagaattc
1381 tgaaggacat gaacccttga ccccaagttc aagtgggaac acagcagagc acagtcctag
1441 catctcaccc agctcagtgg aaaacagtgg ggtcagtcag tcaccactcg tgcaataaga
1501 cattttctag ctacttcaaa cattccccag taccttcagt tccaggattt aaaatgcaag
1561 aaaaaacatt tttactgctg cttagttttt ggactgaaaa gatattaaaa ctcaagaagg
1621 accaagaagt tttcatatgt atcaatatat atactcctca ctgtgtaact tacctagaaa
1681 tacaaacttt tccaatttta aaaaatcagc catttcatgc aaccagaaac tagttaaaag
1741 cttctatttt cctctttgaa cactcaagat tgcatggcaa agacccagtc aaaatgattt
1801 acccctggtt aagtttctga agactttgta catacagaag tatggctctg ttctttctat
1861 actgtatgtt tggtgctttc cttttgtctt gcatactcaa aataaccatg acaccaaggt
1921 tatgaaatag actactgtac acgtctacct aggttcaaaa agataactgt cttgctttca
1981 tggaatagtc aagacatcaa ggtaaggaaa caggactatt gacaggacta ttgtacagta
2041 tgacaagata aggctgaaga tattctactt tagttagtat ggaagcttgt ctttgctctt
2101 tctgatgctc tcaaactgca tcttttattt catgttgccc agtaaaagta tacaaattcc
2161 ctgcactagc agaagagaat tctgtatcag tgtaactgcc agttcagtta atcaaatgtc
2221 atttgttcaa ttgttaatgt cactttaaat taaaagtggt ttattacttg tttaatgaca
2281 taactacaca gttaaaaaaa atttttttac agtaatgata gcctccaagg cagaaacact
2341 tttcagtgtt aagtttttgt ttacttgttc acaagccatt agggaaattt catgggataa
2401 ttagcaggct ggtctaccac ctggaccatg taactctagt gtccttcctg attcatgcct
2461 gatattggga tttttttttt ccagccttct tgatgccaag gggctaatta atattaacaa
2521 ctcccaaaga aacaggcata gaatctgcct cctttgacct tgttcaatca ctatgaagca
2581 gagtgaaagc tgtggtagag tggttaacag atacaagtgt cagtttctta gttctcattt
2641 aagcactagt ggaatttttt ttttttgata tattagcaag tctgtgatgt actttcactg
2701 gctctgtttg tacattgaga ttgtttgttt aacaatgctt tctatgttca tatactgttt
2761 gtttaccttt ttccatggag tctcctggca aagaataaaa tatatttatt ttaaaaaaaa
2821 aaaaaaaa
//