LOCUS BC057786 2199 bp mRNA linear HUM 01-SEP-2006
DEFINITION Homo sapiens podocan-like 1, mRNA (cDNA clone MGC:71618
IMAGE:30347370), complete cds.
ACCESSION BC057786
VERSION BC057786.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2199)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2199)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-SEP-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Dr. Stefan Hansson
cDNA Library Preparation: Michael Brownstein / Ted Usdin
Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 133 Row: j Column: 24
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 40254970.
FEATURES Location/Qualifiers
source 1..2199
/db_xref="H-InvDB:HIT000259724"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:71618 IMAGE:30347370"
/tissue_type="Placenta, normal"
/clone_lib="NIH_MGC_147"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..2199
/gene="PODNL1"
/gene_synonym="FLJ23447"
/gene_synonym="SLRR5B"
/db_xref="GeneID:79883"
/db_xref="HGNC:HGNC:26275"
CDS 275..1813
/gene="PODNL1"
/gene_synonym="FLJ23447"
/gene_synonym="SLRR5B"
/codon_start=1
/product="podocan-like 1"
/protein_id="AAH57786.1"
/db_xref="GeneID:79883"
/db_xref="HGNC:HGNC:26275"
/translation="MAESGLAMWPSLLLLLLLPGPPPVAGLEDAAFPHLGESLQPLLR
ACPLRCSCPRVDTVDCDGLDLRVFPDNITRAAQHLSLQNNQLQELPYNELSRLSGLRT
LNLHNNLISSEGLPDEAFESLTQLQHLCVAHNKLSVAPQFLPRSLRVADLAANQVMEI
FPLTFGEKPALRSVYLHNNQLSNAGLPPDAFRGSEAIATLSLSNNQLSYLPPSLPPSL
ERLHLQNNLISKVPRGALSRQTQLRELYLQHNQLTDSGLDATTFSKLHSLEYLDLSHN
QLTTVPAGLPRTLAILHLGRNRIRQVEAARLHGARGLRYLLLQHNQLGSSGLPAGALR
PLRGLHTLHLYGNGLDRVPPALPRRLRALVLPHNHVAALGARDLVATPGLTELNLAYN
RLASARVHHRAFRRLRALRSLDLAGNQLTRLPMGLPTGLRTLQLQRNQLRMLEPEPLA
GLDQLRELSLAHNRLRVGDIGPGTWHELQALQVRHRLVSHTVPRAPPSPCLPCHVPNI
LVSW"
BASE COUNT 432 a 757 c 642 g 368 t
ORIGIN
1 aggctggctg aggttacgaa agcagagatg gggtggttgt tgggggggac caaggggacg
61 ggctggcctg tcctcaccac cccatccggc cgcctgcctg tcctccccag ggcggggaag
121 ggggtgggcc agctccccca aagcccgggg agaacaggct gttgtggggg gtggcatggg
181 tctggagatg gggggcggtg gtggccacag cagaggctcc aggaggtgac cgcctggttt
241 ccattaggaa gtcctggtca gcagcttggg cgagatggca gagtcagggc tggccatgtg
301 gccgagcctg ctgctgctcc tgctgttgcc ggggcccccg cccgtcgccg gcttggaaga
361 cgctgccttc ccccacctgg gggagagctt gcagcccctg ctccgggcct gtcccctgcg
421 ctgctcctgc ccccgagtcg acactgtgga ctgtgatggc ttggaccttc gagtgttccc
481 ggacaacatc accagagccg ctcagcacct ctccctgcag aacaaccagc tccaggaact
541 cccctacaat gagctgtccc gcctcagtgg cctgcgaacc ctcaacctcc acaacaacct
601 catctcctcc gaaggcctgc ctgacgaggc cttcgagtcc ctcacccagc tgcagcacct
661 ctgcgtggct cacaacaagc tctcagtggc ccctcagttt ctgccccggt ccctccgtgt
721 cgcggatctg gctgccaacc aagtgatgga gatcttcccc ctcacctttg gggagaagcc
781 ggcactcagg tccgtgtacc tccacaacaa ccagctgagc aacgctggcc tgccccccga
841 cgccttccgc ggctccgagg ccatcgccac cctcagcctc tccaacaacc agctcagcta
901 cctgccgccc agcctgccgc cctcactcga gcggctccac ctgcagaaca atctcatctc
961 caaggtgccc cgaggagccc tgagccgcca gactcaactc cgtgagctct acctccagca
1021 caaccagctg acagacagtg gcctggatgc caccaccttc agcaagctgc atagccttga
1081 atacctggat ctctcccaca accagctgac cacagtgccc gccggcctgc cccggaccct
1141 ggctatcctg cacctgggcc gcaaccgcat ccggcaggtg gaggcggctc ggctgcacgg
1201 ggcgcgtggt ctgcgctatt tgttgctgca gcacaaccag ctggggagct cagggctgcc
1261 cgccggggct ctgcggccgc tgcggggcct gcacacgctg cacctctatg gcaatgggct
1321 ggaccgcgtg cctccagccc tgccccgccg cctgcgtgcc ctggtgctgc cccacaacca
1381 cgtggccgcg ctgggtgccc gtgacctggt cgccacaccg ggcctgacgg agcttaacct
1441 ggcctataac cgcctggcca gcgcccgtgt gcaccaccgg gccttccgcc ggctgcgtgc
1501 cctgcgcagc ctcgacctgg cagggaatca gctaacccgg ctgcccatgg gcctgcccac
1561 tggcctgcgc accctgcagc tgcaacgcaa ccagctgcgg atgctcgagc ccgagcctct
1621 ggccggcctg gaccaactgc gggagctcag cctggcgcac aaccggctcc gggtcggcga
1681 catcgggcca ggcacctggc atgagctcca agccctccag gtcaggcaca ggctggttag
1741 ccacactgtc cccagggccc ctccatcccc ctgcctgccc tgccacgtcc caaacattct
1801 agttagctgg taaagcaatc agaacaagaa aatgataaga gtgggttaga aggtgatgag
1861 gaggctgggt gaggtggctc atgcctgtaa tcccagcact ttggggagcc aaggcaggag
1921 aatcgcttta ggctatgggt ttgagaccag cctggcaaca cagcaagacc ctatctctac
1981 caaaaaaaca tagccaagcg tggtggcaca tgcctgtagt cccagctatt caggaggctg
2041 aggcaggagg atcgcttgag cccagaagtt tgaggctgca atgagccgtg atcgggccac
2101 tgccctctag actgggcaac agagcaagac cctgtctctt gaaaaaaaaa gtgatgaaag
2161 aggtaaaaaa aaaaaaaaaa aaagaaaaaa aaaaaaaaa
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