LOCUS BC053859 1408 bp mRNA linear HUM 28-JUL-2005 DEFINITION Homo sapiens apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B, mRNA (cDNA clone MGC:61606 IMAGE:6174285), complete cds. ACCESSION BC053859 VERSION BC053859.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1408) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1408) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (13-JUN-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 115 Row: n Column: 3 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 22907024. FEATURES Location/Qualifiers source 1..1408 /db_xref="H-InvDB:HIT000053997" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:61606 IMAGE:6174285" /tissue_type="Uterus, leiomyosarcoma" /clone_lib="NIH_MGC_71" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..1408 /gene="APOBEC3B" /gene_synonym="APOBEC1L" /gene_synonym="ARCD3" /gene_synonym="ARP4" /gene_synonym="DJ742C19.2" /gene_synonym="FLJ21201" /gene_synonym="PHRBNL" /db_xref="GeneID:9582" /db_xref="MIM:607110" CDS 82..837 /gene="APOBEC3B" /gene_synonym="APOBEC1L" /gene_synonym="ARCD3" /gene_synonym="ARP4" /gene_synonym="DJ742C19.2" /gene_synonym="FLJ21201" /gene_synonym="PHRBNL" /codon_start=1 /product="APOBEC3B protein" /protein_id="AAH53859.1" /db_xref="GeneID:9582" /db_xref="MIM:607110" /translation="MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRG RSNLLWDTGVFRGQVYFEPQYHAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVA KLAEFLSEHPNVTLTISAARLYYYWERDYRRALCRLSQAGARVKIMDYEEFAYCWENF VYNEGQQFMPWYKFDENYAFLHRTLKEILRLRIFSVAFTAAMRSCASWTWFLLCSWTR PRSTGSLGSSPGAPASPGAVPGKCVRSFRRTHT" BASE COUNT 380 a 344 c 341 g 343 t ORIGIN 1 gactagttct agatcgcgat ctagaactag tagcttcaaa aaaagagcgg gacagggaca 61 agcgtatcta agaggctgaa catgaatcca cagatcagaa atccgatgga gcggatgtat 121 cgagacacat tctacgacaa ctttgaaaac gaacccatcc tctatggtcg gagctacact 181 tggctgtgct atgaagtgaa aataaagagg ggccgctcaa atctcctttg ggacacaggg 241 gtctttcgag gccaggtgta tttcgagcct cagtaccacg cagaaatgtg cttcctctct 301 tggttctgtg gcaaccagct gcctgcttac aagtgtttcc agatcacctg gtttgtatcc 361 tggaccccct gcccggactg tgtggcgaag ctggccgaat tcctgtctga gcaccccaat 421 gtcaccctga ccatctccgc cgcccgcctc tactactact gggaaagaga ttaccgaagg 481 gcgctctgca ggctgagtca ggcaggagcc cgcgtgaaga tcatggacta tgaagaattt 541 gcatactgct gggaaaactt tgtgtacaat gaaggtcagc aattcatgcc ttggtacaaa 601 ttcgatgaaa attatgcatt cctgcaccgc acgctaaagg agattctcag gctaagaatc 661 ttctctgtgg cttttacggc cgccatgcgg agctgcgctt cttggacctg gttccttctt 721 tgcagttgga cccggcccag atctacaggg tcacttggtt catctcctgg agcccctgct 781 tctcctgggg ctgtgccggg gaagtgcgtg cgttccttca ggagaacaca cacgtgagac 841 tgcgcatctt cgctgcccgc atctatgatt atgaccccct atataaggag gcgctgcaaa 901 tgctgcggga tgctggggcc caagtctcca tcatgaccta cgatgagttt gagtactgct 961 gggacacctt tgtgtaccgc cagggatgtc ccttccagcc ctgggatgga ctagaggagc 1021 acagccaagc cctgagtggg aggctgcggg ccattctcca gaatcaggga aactgaagga 1081 tgggcctcag tctctaagga aggcagagac ctgggttgag cagcagaata aaagatcttc 1141 ttccaagaaa tgcaaacaga ccgttcacca ccatctccag ctgctcacag acaccagcaa 1201 agcaatgtgc tcctgatcaa gtagattttt taaaaatcag agtcaattaa ttttaattga 1261 aaatttctct tatgttccaa gtgtacaaga gtaagattat gctcaatatt cccagaatag 1321 ttttcaatgt attaatgaag tgattaattg gctccatatt tagactaata aaacattaag 1381 aatcttccat aaaaaaaaaa aaaaaaaa //