LOCUS BC051886 2152 bp mRNA linear HUM 18-AUG-2006
DEFINITION Homo sapiens PRP39 pre-mRNA processing factor 39 homolog (S.
cerevisiae), mRNA (cDNA clone IMAGE:6527003), partial cds.
ACCESSION BC051886
VERSION BC051886.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2152)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2152)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-MAY-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 110 Row: p Column: 8.
FEATURES Location/Qualifiers
source 1..2152
/db_xref="H-InvDB:HIT000099451"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:6527003"
/tissue_type="Uterus, leiomyosarcoma"
/clone_lib="NIH_MGC_71"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..2152
/gene="PRPF39"
/gene_synonym="FLJ11128"
/gene_synonym="FLJ20666"
/db_xref="GeneID:55015"
/db_xref="HGNC:HGNC:20314"
CDS <1..1442
/gene="PRPF39"
/gene_synonym="FLJ11128"
/gene_synonym="FLJ20666"
/codon_start=3
/product="PRPF39 protein"
/protein_id="AAH51886.1"
/db_xref="GeneID:55015"
/db_xref="HGNC:HGNC:20314"
/translation="TFEHAVLAAGTDFRSDRLWEMYINWENEQGNLREVTAIYDRILG
IPTQLYSHHFQRFKEHVQNNLPRDLLTGEQFIQLRRELASVNGHSGDDGPPGDDLPSG
IEDITDPAKLITEIENMRHRIIEIHQEMFNYNEHEVSKRWTFEEGIKRPYFHVKPLEK
AQLKNWKEYLEFEIENGTHERVVVLFERCVISCALYEEFWIKYAKYMENHSIEGVRHV
FSRACTIHLPKKPMVHMLWAAFEEQQGNINEARNILKTFEECVLGLAMVRLRRVSLER
RHGNLEEAEHLLQDAIKNAKSNNESSFYAVKLARHLFKIQKNLPKSRKVLLEAIERDK
ENTKLYLNLLEMEYSGDLKQNEENILNCFDKAVHGSLPIKMRITFSQRKVEFLEDFGS
DVNKLLNAYDEHQTLLKEQDSLKRKAENGSEEPEEKKAHTEDTTSSSTQMIDGDLQAN
QAVYNYSAWYQYNYQNPWNYGQYYPPPPT"
BASE COUNT 771 a 309 c 417 g 655 t
ORIGIN
1 gaacttttga gcatgctgtt ctagctgcag gaacagattt ccgttctgac agactgtggg
61 aaatgtatat aaactgggaa aatgagcagg gaaacctgag agaagttaca gctatatatg
121 atcgtattct tggtattcca acacagctgt atagtcatca ttttcagaga tttaaagaac
181 atgtacagaa taatttgcct agagatcttt taactggtga acagtttatt cagttgcgaa
241 gggaattagc ttctgtaaat ggtcatagtg gtgatgatgg tcctcctggt gatgatctac
301 catcgggaat tgaagacata accgatcctg caaagctaat tacagaaata gaaaacatga
361 gacatagaat cattgagatt catcaagaaa tgtttaatta taatgagcat gaagttagta
421 aaaggtggac atttgaagaa ggtattaaaa gaccttactt tcatgtgaaa cctttggaaa
481 aggcacaact aaaaaactgg aaagaatact tagaatttga aattgaaaat gggactcatg
541 aacgagttgt ggttctcttt gaaagatgtg tcatatcatg tgccctctat gaggagtttt
601 ggattaagta tgccaagtac atggaaaacc atagcattga aggagtgagg catgtcttca
661 gcagagcttg tactatacat ctcccaaaga aacccatggt gcatatgctt tgggcagctt
721 ttgaggaaca gcagggtaat attaatgaag ccaggaatat cttgaaaaca tttgaagaat
781 gtgttctagg attggcaatg gttcgtttac gaagagtaag tttagaacga cggcatggaa
841 atctggaaga agctgaacat ttgcttcagg atgccattaa gaatgccaaa tcaaataatg
901 aatcttcatt ttatgctgtc aaactagccc ggcatctttt caaaatacag aaaaaccttc
961 caaaatcaag aaaggtgctt ttggaagcaa tcgaaagaga caaagagaac acaaagttat
1021 acctcaattt acttgaaatg gaatatagtg gtgacctcaa acaaaatgaa gaaaatatcc
1081 taaattgttt tgacaaagct gtacatggtt cattacctat taaaatgaga attacatttt
1141 ctcagagaaa agtggaattt cttgaagatt ttggttccga tgttaataag cttctgaatg
1201 cttatgatga acatcaaaca ctcctgaaag aacaggattc tttaaaaagg aaagcagaaa
1261 atggatcaga agaaccagag gaaaagaaag cacatacaga agatacaact tcatcatcta
1321 cacagatgat tgatggtgat ttacaggcaa accaagctgt atataattat agtgcgtggt
1381 atcaatacaa ttatcagaat ccttggaatt atggacaata ttatcctccc cctccaacct
1441 gatgggaaaa atgtaaattt caaatgcagt gtgtgaaaag tatgaaatta ttattttttt
1501 taatgaggga tgtaaacagt ataagcttgt tgtatttgat aacctgtctt ccttgtttct
1561 gtgtaacatg atttgtttag taataggggg aaaatgtcaa ttagtagctt accacagata
1621 ctgtttccta ccatttataa aatttacttt ttattgaaaa actatttttt gatttttgca
1681 ttaagtggtc tagaattctt ttgcaatgca tttgcaacag aattttgtag ccttaagggg
1741 taggaagaaa aacctgactg caaatcatgt cagtgtagta caaaattctg aaaacacata
1801 agggctggtt atttacctcc tttttttttt ttttaaagaa aaaaggactt ttaacctttg
1861 ctgacaaggt tttgtctgtt tcagttatac ttgtgaattg tgatctaact gcagaaagga
1921 tacattatta aaatactttg ccttggaata gattataaat gagaaaatgg aatgtttgca
1981 tccctttaaa aatgaaaatc atatcaaaag tatgttgttt caggagactt tgtatttaga
2041 atattcatgt aaaacttgtg aacaagcttt cattttgatc aaactgatct tcatttttgt
2101 aataaaacgg aagactcatc cagtaaaaaa aaaaaaaaaa aaaaaaaaaa aa
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