LOCUS BC050008 3425 bp mRNA linear HUM 11-AUG-2006
DEFINITION Homo sapiens protein tyrosine phosphatase, non-receptor type 12,
mRNA (cDNA clone MGC:48282 IMAGE:5268732), complete cds.
ACCESSION BC050008
VERSION BC050008.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3425)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3425)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-APR-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 91 Row: b Column: 24
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 18375651.
FEATURES Location/Qualifiers
source 1..3425
/db_xref="H-InvDB:HIT000099097"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:48282 IMAGE:5268732"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3425
/gene="PTPN12"
/gene_synonym="PTP-PEST"
/gene_synonym="PTPG1"
/db_xref="GeneID:5782"
/db_xref="HGNC:HGNC:9645"
/db_xref="MIM:600079"
CDS 277..2619
/gene="PTPN12"
/gene_synonym="PTP-PEST"
/gene_synonym="PTPG1"
/codon_start=1
/product="protein tyrosine phosphatase, non-receptor type
12"
/protein_id="AAH50008.2"
/db_xref="GeneID:5782"
/db_xref="HGNC:HGNC:9645"
/db_xref="MIM:600079"
/translation="MEQVEILRKFIQRVQAMKSPDHNGEDNFARDFMRLRRLSTKYRT
EKIYPTATGEKEENVKKNRYKDILPFDHSRVKLTLKTPSQDSDYINANFIKGVYGPKA
YVATQGPLANTVIDFWRMIWEYNVVIIVMACREFEMGRKKCERYWPLYGEDPITFAPF
KISCEDEQARTDYFIRTLLLEFQNESRRLYQFHYVNWPDHDVPSSFDSILDMISLMRK
YQEHEDVPICIHCSAGCGRTGAICAIDYTWNLLKAGKIPEEFNVFNLIQEMRTQRHSA
VQTKEQYELVHRAIAQLFEKQLQLYEIHGAQKIADGVNEINTENMISSIEPEKQDSPP
PKPPRTRSCLVEGDAKEEILQPPEPHPVPPILTPSPPSAFPTVTTVWQDNDRYHPKPV
LHMVSSEQHSADLNRNYSKSTELPGKNESTIEQIDKKLERNLSFEIKKVPLQEGPKSF
DGNTLLNRGHAIKIKSASPCIADKISKPQELSSDLNVGDTSQNSCVDCSVTQSNKVSV
TPPEESQNSDTPPRPDRLPLDEKGHVTWSFHGPENAIPIPDLSEGNSSDINYQTRKTV
SLTPSPTTQVETPDLVDHDNTSPLFRTPLSFTNPLHSDDSDSDERNSDGAVTQNKTNI
STASATVSAATSTESISTRKVLPMSIARHNIAGTTHSGAEKDVDVSEDSPPPLPERTP
ESFVLASEHNTPVRSEWSELQSQERSEQKKSEGLITSENEKCDHPAGGIHYEMCIECP
PTFSDKREQISENPTEATDIGFGNRCGKPKGPRDPPSEWT"
BASE COUNT 1122 a 638 c 757 g 908 t
ORIGIN
1 ggggagaggc ggctgcggct gcggctgcgg ctgctggcgg ggggtggggg ggaggaggaa
61 ccgggaaggg ggggcagggc gagcggagag ctagctgtgt tcctgaggcg cagccgccgc
121 ctagggcggt ggggaggagg agggagccgc ggggcttggc ggggtcggga gggagggacg
181 tgctggggga acgagctggg gaagacggag cgggctctgt gccgggcggg cgggcggcgg
241 gggggccagc gaccgcagcc ggggggacgc gggaggatgg agcaagtgga gatcctgagg
301 aaattcatcc agagggtcca ggccatgaag agtcctgacc acaatgggga ggacaacttc
361 gcccgggact tcatgcggtt aagaagattg tctaccaaat atagaacaga aaagatatat
421 cccacagcca ctggagaaaa agaagaaaat gttaaaaaga acagatacaa ggacatactg
481 ccatttgatc acagccgagt taaattgaca ttaaagactc cttcacaaga ttcagactat
541 atcaatgcaa attttataaa gggcgtctat gggccaaaag catatgtagc aactcaagga
601 cctttagcaa atacagtaat agatttttgg aggatgatat gggagtataa tgttgtgatc
661 attgtaatgg cctgccgaga atttgagatg ggaaggaaaa aatgtgagcg ctattggcct
721 ttgtatggag aagaccccat aacgtttgca ccatttaaaa tttcttgtga ggatgaacaa
781 gcaagaacag actacttcat caggacactc ttacttgaat ttcaaaatga atctcgtagg
841 ctgtatcagt ttcattatgt gaactggcca gaccatgatg ttccttcatc atttgattct
901 attctggaca tgataagctt aatgaggaaa tatcaagaac atgaagatgt tcctatttgt
961 attcattgca gtgcaggctg tggaagaaca ggtgccattt gtgccataga ttatacgtgg
1021 aatttactaa aagctgggaa aataccagag gaatttaatg tatttaattt aatacaagaa
1081 atgagaacac aaaggcattc tgcagtacaa acaaaggagc aatatgaact tgttcataga
1141 gctattgccc aactgtttga aaaacagcta caactatatg aaattcatgg agctcagaaa
1201 attgctgatg gagtgaatga aattaacact gaaaacatga tcagctccat agagcctgaa
1261 aaacaagatt ctcctcctcc aaaaccacca aggacccgca gttgccttgt tgaaggggat
1321 gctaaagaag aaatactgca gccaccggaa cctcatccag tgccacccat cttgacacct
1381 tctccccctt cagcttttcc aacagtcact actgtgtggc aggacaatga tagataccat
1441 ccaaagccag tgttgcatat ggtttcatca gaacaacatt cagcagacct caacagaaac
1501 tatagtaaat caacagaact tccagggaaa aatgaatcaa caattgaaca gatagataaa
1561 aaattggaac gaaatttaag ttttgagatt aagaaggtcc ctctccaaga gggaccaaaa
1621 agttttgatg ggaacacact tttgaatagg ggacatgcaa ttaaaattaa atctgcttca
1681 ccttgtatag ctgataaaat ctctaagcca caggaattaa gttcagatct aaatgtcggt
1741 gatacttccc agaattcttg tgtggactgc agtgtaacac aatcaaacaa agtttcagtt
1801 actccaccag aagaatccca gaattcagac acacctccaa ggccagaccg cttgcctctt
1861 gatgagaaag gacatgtaac gtggtcattt catggacctg aaaatgccat acccatacct
1921 gatttatctg aaggcaattc ctcagatatc aactatcaaa ctaggaaaac tgtgagttta
1981 acaccaagtc ctacaacaca agttgaaaca cctgatcttg tggatcatga taacacttca
2041 ccactcttca gaacacccct cagttttact aatccacttc actctgatga ctcagactca
2101 gatgaaagaa actctgatgg tgctgtgacc cagaataaaa ctaatatttc aacagcaagt
2161 gccacagttt ctgctgccac tagtactgaa agcatttcta ctaggaaagt attgccaatg
2221 tccattgcta gacataatat agcaggaaca acacattcag gtgctgaaaa agatgttgat
2281 gttagtgaag attcacctcc tcccctacct gaaagaactc ctgaatcgtt tgtgttagca
2341 agtgaacata atacacctgt aagatcggaa tggagtgaac ttcaaagtca ggaacgatct
2401 gaacaaaaaa agtctgaagg cttgataacc tctgaaaatg agaaatgtga tcatccagcg
2461 ggaggtattc actatgaaat gtgcatagaa tgtccaccta ctttcagtga caagagagaa
2521 caaatatcag aaaatccaac agaagccaca gatattggtt ttggtaatcg atgtggaaaa
2581 cccaaaggac caagagatcc accttcagaa tggacatgat tcagggagct agaagacact
2641 ttaagttata ctggaaaatt caggtgccac tgaaagccag atttatagta ttccatcttt
2701 aatatgtggg actaacagca gtgtagattg ttaccttaat attttttgct gggaccatct
2761 acctgcctta tactacactt aggaaaaagt attacatatg gtttattttg aaacttcaag
2821 tattattgcc ttaatgtctc ttaaccctgt tacacgctgc ttgtagacat gttaatatag
2881 taataccttt atgatatatt gagtttaagg actactcttt ttctgtttta tcatgtatgc
2941 attattttgt atatgtacag ggcaagtagg tatataattt gataaagttg caattgaaat
3001 attattaaca gaagatgtaa gaaatttctg catggtctaa atctttgtgt actttatttg
3061 taaattattt gccctggagt tttagaaaat agtttctgaa ttttaaactt gctggattca
3121 tgcagccagc tttgcaggtt atcagagatc aaagattgta ataataattt tgtaaattgt
3181 aagcaaaaag ttatttttat attatataca gtctaattgt tcatcctaat tgttcctgtt
3241 ttcatctagt cagagattca gtaagtgcct tggaacaata ttgaattctc ttagcttgtg
3301 tgtgtttctt taatatttga actcaagtgg gattagaaga ctatcaaaat acatgtatgt
3361 ttcaggatat ttgacctgtc attaaaaaaa acaaacagtt ttacagtgcc aaaaaaaaaa
3421 aaaaa
//