LOCUS BC049169 4544 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens solute carrier family 9 (sodium/hydrogen exchanger),
member 6, mRNA (cDNA clone MGC:57187 IMAGE:5312949), complete cds.
ACCESSION BC049169
VERSION BC049169.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4544)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4544)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (21-MAR-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 106 Row: p Column: 6
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 5454069.
FEATURES Location/Qualifiers
source 1..4544
/db_xref="H-InvDB:HIT000053352"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:57187 IMAGE:5312949"
/tissue_type="Brain, hypothalamus"
/clone_lib="NIH_MGC_96"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..4544
/gene="SLC9A6"
/gene_synonym="KIAA0267"
/gene_synonym="NHE6"
/db_xref="GeneID:10479"
/db_xref="HGNC:HGNC:11079"
/db_xref="MIM:300231"
CDS 1..2106
/gene="SLC9A6"
/gene_synonym="KIAA0267"
/gene_synonym="NHE6"
/codon_start=1
/product="solute carrier family 9 (sodium/hydrogen
exchanger), member 6"
/protein_id="AAH49169.1"
/db_xref="GeneID:10479"
/db_xref="HGNC:HGNC:11079"
/db_xref="MIM:300231"
/translation="MARRGWRRAPLRRGVGSSPRARRLMRPLWLLLAVGVFDWAGASD
GGGGEARAMDEEIVSEKQAEESHRQDSANLLIFILLLTLTILTIWLFKHRRARFLHET
GLAMIYGLLVGLVLRYGIHVPSDVNNVTLSCEVQSSPTTLLVNVSGKFYEYMLKGEIS
SHELNNVQDNEMLRKVTFDPEVFFNILLPPIIFYAGYSLKRRHFFRNLGSILAYAFLG
TAISCFVIGSIMYGCVTLMKVTGQLAGDFYFTDCLLFGAIVSATDPVTVLAIFHELQV
DVELYALLFGESVLNDAVAIVLSSSIVAYQPAGDNSHTFDVTAMFKSIGIFLGIFSGS
FAMGAATGVVTALVTKFTKLREFQLLETGLFFLMSWSTFLLAEAWGFTGVVAVLFCGI
TQAHYTYNNLSTESQHRTKQLFELLNFLAENFIFSYMGLTLFTFQNHVFNPTFVVGAF
VAIFLGRAANIYPLSLLLNLGRRSKIGSNFQHMMMFAGLRGAMAFALAIRDTATYARQ
MMFSTTLLIVFFTVWVFGGGTTAMLSCLHIRVGVDSDQEHLGVPENERRTTKAESAWL
FRMWYNFDHNYLKPLLTHSGPPLTTTLPACCGPIARCLTSPQAYENQEQLKDDDSDLI
LNDGDISLTYGDSTVNTEPATSSAPRRFMGNSSEDALDRELAFGDHELVIRGTRLVLP
MDDSEPPLNLLDNTRHGPA"
BASE COUNT 1184 a 900 c 1007 g 1453 t
ORIGIN
1 atggctcggc gcggctggcg gcgggcaccc ctccgccgtg gcgtcggcag cagtccccga
61 gcccgcaggc tcatgcggcc cctttggttg ctcctcgcag tgggcgtctt tgactgggca
121 ggggcttcgg acggcggcgg cggagaggct agagccatgg acgaggagat cgtgtccgag
181 aagcaagccg aggagagcca ccggcaggac agcgccaacc tgctcatctt catcctgctg
241 ctcaccctca ccattctcac aatctggctc ttcaagcacc gccgggcccg cttcctgcac
301 gaaaccggcc tggctatgat ttatggtctt ttggtgggcc ttgtgcttcg gtatggcatt
361 catgttccga gtgatgtaaa taatgtgacc ctgagctgtg aagtgcagtc aagtccaact
421 accttactgg taaatgttag tggaaaattt tatgagtata tgctgaaagg agagattagt
481 tcacatgaac tcaataatgt tcaagataat gaaatgctta gaaaggttac ttttgatcca
541 gaagtatttt tcaacatatt acttcctcct atcatatttt atgcaggtta tagcctgaaa
601 aggagacatt tttttcgaaa tcttgggtct atcctagcat acgcttttct tggaacagca
661 atttcttgtt tcgttattgg gtcaataatg tatggctgtg taacgctgat gaaggtaacg
721 ggacaacttg caggagattt ttactttaca gattgcctac tgtttggtgc cattgtatca
781 gcaactgatc cagtgactgt tcttgctata ttccacgagc ttcaagttga tgttgaactc
841 tatgcacttc tttttggtga aagtgtcctc aatgatgctg ttgccatagt gctgtcctcc
901 tcaatagtgg cataccagcc agctggagac aacagtcaca cctttgatgt cacagcgatg
961 ttcaagtcta ttgggatctt ccttggaatc ttcagtggat cttttgcaat gggtgctgct
1021 actggagtgg tgacagcttt agtgacaaag ttcaccaaat tacgggagtt ccagttgttg
1081 gagacaggcc tgttcttctt gatgtcctgg agtaccttcc tcttggctga agcatggggc
1141 ttcacaggtg tagttgcagt attgttttgt ggcatcacac aagcacatta tacgtataat
1201 aatttgtcaa cggagtctca gcatagaact aaacagttgt ttgagcttct caatttcttg
1261 gcagagaatt tcatcttctc ctacatgggg ctgacactgt tcaccttcca gaaccatgtc
1321 tttaacccaa catttgtagt aggagcattt gttgctattt tcttgggaag agctgccaat
1381 atttacccct tgtccctctt acttaatttg ggtagaagaa gtaagattgg atcaaatttt
1441 caacacatga tgatgtttgc tggccttcgt ggtgcaatgg catttgcctt ggccattcga
1501 gatactgcca cttatgcacg gcaaatgatg ttcagcacca cgcttctgat tgtgtttttt
1561 accgtgtggg tatttggtgg tggcaccact gcaatgctgt catgcttgca tatcagggtt
1621 ggtgttgatt cagaccaaga acacttgggt gttcctgaaa atgaaaggag aactaccaaa
1681 gcagagagtg cttggctttt ccggatgtgg tacaactttg atcataacta tctgaagcct
1741 ctgctgaccc acagcgggcc tccgctgaca acaacactcc ctgcctgctg tggacccatc
1801 gccaggtgcc tcaccagccc ccaggcttac gaaaaccagg aacagttgaa agatgatgat
1861 tctgatctta ttctcaatga tggtgacatc agtttgacat atggagattc tactgtgaac
1921 actgaaccgg ccacatccag cgccccaagg agatttatgg gaaacagttc tgaagatgcc
1981 ttggatcggg agcttgcatt tggggaccat gaactggtca ttcgaggaac acgcctggtt
2041 cttccaatgg atgattctga acccccgcta aatttgttag ataatacgag acatggtcca
2101 gcctaagctt actaatactc acttagtgat ttgtaaaatt tgcacatgtg attgtgaaga
2161 aatttgtact acctaaaagt cccagtgcat gtctctgaat gtgtaagcta tataaatgct
2221 atttatatgg catagaaaga atataaatat cctgtacacg gcagattgtg aacaaactat
2281 attcctttaa gttttcctgg ttgcactctg tagactggat ctgttttagg aagttacttt
2341 cacagtgatg ttgtgtgttc tgttagtttt atgtctcagt taaagtgtaa aaagtgacgg
2401 attttctctt tcttaaactt acctgacact taaccagagt accagttctc gtgatgtgaa
2461 ttaatttttt tgtgtgctag gggagggaga gtgaggaggg agtgttattt ccttgggaac
2521 ctagggagga gaggttcctt tgttgggaaa cttttgttga tagctgctgc ctttgtcctg
2581 atcgttttct ttcccttttc tctggtggcc tgttgtggtg caacgagctg atggcatttg
2641 atcttgcccc attcaggttg gggagtgaag tgtgaggacc cttttccccc gcttgctgtg
2701 aaagcacaga ttcattgact acagtacact gttgttcaga aaagaaggct gcaaatgact
2761 tctgagactt tatgtctttt cttccagacc aagaccgtag aaggagtcac atctagccgg
2821 cttagccaaa gtacaggtgt atatagttca gggcacttga tttagatttg gaggggctgg
2881 ggtgggcaga gagcaagagg cgagtaaaga gaatggtggt ttcagagatc tctcttccca
2941 aatgtgtaaa tattctatac cagataagtt taaataagaa atttaattgc tgcttaattt
3001 ttgattatgt actttatctg tatagcaggc tttgtcgtca gaagttttta tatcgattta
3061 aattgctgct ctttagcagc caaacaggag caaaatgtaa aatttttgaa cttactgtgt
3121 ctaatcatca tttgttagtc tgtagttaat gtcaacagtt aatttatgaa cccacgatcg
3181 ttccacactg caccaaagtc agtcataaga gaaatcgaat attctggagc actgattgca
3241 gcagggtggc tcctttgtgt gcagcaggtg tagtagtctt cattttcatg gtacgtttta
3301 atattaatta cctaagctgc catgcatttt ttttttacag ttctcaagga agagcacaga
3361 acaatttctc atttcatatt tggagtatga aagtagattc tattttgtaa tgctgataat
3421 acctaaagat gcattgaatg cttggaagaa tgctttttga tgttgatttt gacctgttca
3481 tgattcagaa gaaaaacaaa cttttttgga ttttttttcc ctcaggtctg agtagcattg
3541 ccttaaatct tatccagtta gaacattgat ttatttacat gatgttcaga ttttccagtg
3601 aaaaataccc ttctgaacaa aacatgtact tactctccga aaggcatcta tctgtgctat
3661 tgcaaacact ccttgagatt ttaggggaat tctaatgttg taccctttcg tggcagcttt
3721 gactgttggc atagccattt gttatgtagt ggtagcgact ttcctgctat gcaggaatcc
3781 ctcccatgac gtgtatgttt tacatgatgt gtgcctcttc acgcagtaaa tagtttcttg
3841 ttaatgtatg tttgaggagt ttgaacgtca gtgtcactta cccacaaagt tattcaagtt
3901 gtaaaaggtt atacaataat ttaacaacta ccttttttat tctgtcgggt tactgacctc
3961 actttatgta aatacttcgc atgacaaatt cagtaactcg tctatttcag catgcataag
4021 acttttcact agggaaactg ataaagcttg agtcaactaa atctgccttc atactttatc
4081 aaggggaacc aagcctgctg tgcttacatc agcatctgga agactttcct ctcctctaat
4141 ctgtgtacac atctccaagc aaggaagaaa aaacaaactc tgctcagacg cctatgaaac
4201 acctgaatga actttgatga agtacagtct gagttaccat catgcacaag tagaactgct
4261 cttggacttg ttttcctgtt gtttgtggaa cctacgcgtt tgaatggctt gaacgttgca
4321 tcttttaaag ttatttttta aggtttcttg gcatttatcc tagttgtccg tgtttggcaa
4381 tgtgctgtta aagtaataga cttttaatct ttatgtattt tttgttttct ctggagtact
4441 tggacagatg ttatagtggt ttcttttagg aaaatctgtc attaaaaaag ttatagcctt
4501 gcaaataaaa aaaaaaaaaa aaaaaaagaa aaaaaaaaaa aaaa
//