LOCUS BC048797 3110 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens DNA fragmentation factor, 40kDa, beta polypeptide (caspase-activated DNase), mRNA (cDNA clone MGC:51917 IMAGE:5204996), complete cds. ACCESSION BC048797 VERSION BC048797.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3110) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3110) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (14-MAR-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Life Technologies, Inc. cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 93 Row: i Column: 21 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 51988888. FEATURES Location/Qualifiers source 1..3110 /db_xref="H-InvDB:HIT000053337" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:51917 IMAGE:5204996" /tissue_type="Lung, Spleen, fetal, pooled" /clone_lib="NIH_MGC_122" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..3110 /gene="DFFB" /gene_synonym="CAD" /gene_synonym="CPAN" /gene_synonym="DFF-40" /gene_synonym="DFF2" /gene_synonym="DFF40" /db_xref="GeneID:1677" /db_xref="HGNC:HGNC:2773" /db_xref="MIM:601883" CDS 324..1340 /gene="DFFB" /gene_synonym="CAD" /gene_synonym="CPAN" /gene_synonym="DFF-40" /gene_synonym="DFF2" /gene_synonym="DFF40" /codon_start=1 /product="DNA fragmentation factor, 40kDa, beta polypeptide (caspase-activated DNase)" /protein_id="AAH48797.1" /db_xref="GeneID:1677" /db_xref="HGNC:HGNC:2773" /db_xref="MIM:601883" /translation="MLQKPKSVKLRALRSPRKFGVAGRSCQEVLRKGCLRFQLPERGS RLCLYEDGTELTEDYFPSVPDNAELVLLTLGQAWQGYVSDIRRFLSAFHEPQVGLIQA AQQLLCDEQAPQRQRLLADLLHNVSQNIAAETRAEDPPWFEGLESRFQSKSGYLRYSC ESRIRSYLREVSSYPSTVGAEAQEEFLRVLGSMCQRLRSMQYNGSYFDRGAKGGSRLC TPEGWFSCQGPFDMDSCLSRHSINPYSNRESRILFSTWNLDHIIEKKRTIIPTLVEAI KEQDGREVDWEYFYGLLFTSENLKLVHIVCHKKTTHKLNCDPSRIYKPQTRLKRKQPV RKRQ" BASE COUNT 747 a 760 c 816 g 787 t ORIGIN 1 ccgctactct ggccctcagg gttgtgtagt ttccggggcc acggcacctg ggcacaccag 61 gtggcgtcgc gcctttgctt tcctgagcct tctgagtaag gtaatgtggt gtccgtgggg 121 cgacgcctgc gcacaagacc gcgtcgggcc tcacttttcc caggccttct gggtaatgta 181 gtttccggga tcggcacccg gcctgtgcca gcttgcagag ctcaccaggt gcagacccct 241 gcggccaggg cgaggacgga tctgagcagc tgggcagcag gtgccaccgc ctgtgggacc 301 cagagggctt gaggacatct gcaatgctcc agaagcccaa gagcgtgaag ctgcgggccc 361 tgcgcagccc gaggaagttc ggcgtggctg gccggagctg ccaggaggtg ctgcgcaagg 421 gctgtctccg cttccagctc cctgagcgcg gttcccggct gtgcctgtac gaggatggca 481 cggagctgac ggaagattac ttccccagtg ttcccgacaa cgccgagctg gtgctgctca 541 ccttgggcca ggcctggcag ggctatgtga gcgacatcag gcgcttcctc agtgcatttc 601 acgagccaca ggtggggctc atccaggccg cccagcagct gctgtgtgat gagcaggccc 661 cacagaggca gaggctgctg gctgacctcc tgcacaacgt cagccagaac atcgcggccg 721 agacccgggc tgaggacccg ccgtggtttg aaggcttgga gtcccgattt cagagcaagt 781 ctggctatct gagatacagc tgtgagagcc ggatccggag ttacctgagg gaggtgagct 841 cctacccctc cacagtgggt gcggaggctc aggaggaatt cctgcgggtc ctcggctcca 901 tgtgccagag gctccggtcc atgcagtaca atggcagcta cttcgacaga ggagccaagg 961 gcggcagccg cctctgcaca ccggaaggct ggttctcctg ccagggtccc tttgacatgg 1021 acagctgctt atcaagacac tccatcaacc cctacagtaa cagggagagc aggatcctct 1081 tcagcacctg gaacctggat cacataatag aaaagaaacg caccatcatt cctacactgg 1141 tggaagcaat taaggaacaa gatggaagag aagtggactg ggagtatttt tatggcctgc 1201 tttttacctc agagaaccta aaactagtgc acattgtctg ccataagaaa accacccaca 1261 agctcaactg tgacccgagc agaatctaca aaccccagac aaggttgaag cggaagcagc 1321 ctgtgcggaa acgccagtga cacgtacaca ccacgtcctg gtctttgttt gaggcctgac 1381 gtgggcatca ttttaacagg tgcctttttt gtttttttgt ttttcgtttt tttggtcact 1441 ccagtagctc ctggaaaaaa ccttaaaaaa tgtttcctcc aaatctgatt tcattacatt 1501 tctgaattgt tgggtttttt tttgttgttt tgttttgttt tgtagatgga gtttcacttt 1561 tgttgcccag gctggagtgt agtggcgcga tctcggctca gcctcccgag tagctgggat 1621 tacaggcatg tgccaccacg cccggctaat gtttgtattt ttagtagaga cggggtttca 1681 ccatgttggt caggctggtc tcaaactcct gacctcaggt gatccgccca cctcagcctc 1741 ccaaagtgct gggatgacag gtgtgagcca ctgcgcccag cctgaatcat ttcttatacc 1801 ttctgacagc ccaacttcca gaggacagct ctggggtact cgttggatgt ctgtgagtac 1861 ctggtcatac gggtcagtag ggataagaat tgtctctggg ctgaggaatt cttctgttct 1921 ctggtttcac cagcgttggg tttgctcatg taatgtggtc accatactca aatggtgtca 1981 tggctgaagt tggccacctt gcttgaggga caagttgttt atgtatcagc tctctgctgg 2041 gtctcccttt ccatggcaaa tgggcagctc catcctcttg actcttctaa atgcccaaaa 2101 gaggtgtcat gctttggggg tacgatgttt atactccgta aagaacatac aaggacattc 2161 actgctgatt tttttttttg tttgtttgag acagggtctc actctgtcgc tcaggctgga 2221 gtgcagtgat gcaatcttgg ctcactgcaa cctccgcctc tcaggttcaa gtggttctcc 2281 tgcctcagcc tcccaagtag ctgggattac aggcacctac caccagggcc agctaatttt 2341 tgtatgttta gtagtaacgg ggtttcacca tgttggccag gctgttctcg aactcctgac 2401 ctcaggtgat ctgcccgcct cggtctccca aagtgctggg attacaggca tgagccactg 2461 cacctgacct gctgaattgt ttataatggc aagaaatagg aaacccccca atgtctgttg 2521 aacagctatc acgttgaacc acgtgaaact gctgttttct aggccaaaaa tggtgagcga 2581 tcatttattt catgattcaa cctgatacat ttacatagtg caaaactgtg tcacagtttc 2641 aggcttttat gaggaaagcg tttctgtgta gaaactggaa gctgttcagg gcatcggcag 2701 ctgaaccctg ctccgttggt cagcgttact atcatctcgg atcatatgga gctcatgtca 2761 gccgtgtggg tggcgggtgc acagagacgg tctggaagga aacacgcgga tctgaacagc 2821 agtaatcctg ggggatacgg gggttgggct agattacaga gggctcattt tctacgtcat 2881 gtattttatg atacttgaat tttttgaaat gggcatttat tttataacat gttaaaatgt 2941 actttttaaa ttaagtcatt ttgtaatatt tgaattttta catttgttgt acaatcagga 3001 aaagcaataa agatttttca aaaataaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa 3061 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa //