LOCUS BC047392 4362 bp mRNA linear HUM 18-MAR-2009
DEFINITION Homo sapiens suppression of tumorigenicity 7 like, mRNA (cDNA clone
MGC:48464 IMAGE:5273549), complete cds.
ACCESSION BC047392
VERSION BC047392.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4362)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4362)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (28-FEB-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 91 Row: e Column: 5
The stop codon of the CDS annotated on this record is located > 55
bases upstream of a splice junction, and therefore the mRNA is
predicted to be subject to nonsense-mediated mRNA decay (NMD).
FEATURES Location/Qualifiers
source 1..4362
/db_xref="H-InvDB:HIT000098560"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:48464 IMAGE:5273549"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..4362
/gene="ST7L"
/gene_synonym="FAM4B"
/gene_synonym="ST7R"
/gene_synonym="STLR"
/db_xref="GeneID:54879"
/db_xref="HGNC:HGNC:18441"
CDS 32..1699
/gene="ST7L"
/gene_synonym="FAM4B"
/gene_synonym="ST7R"
/gene_synonym="STLR"
/codon_start=1
/product="ST7L protein"
/protein_id="AAH47392.1"
/db_xref="GeneID:54879"
/db_xref="HGNC:HGNC:18441"
/translation="MADRGGVGEAAAVGASPASVPGLNPTLGWRERLRAGLAGTGASL
WFVAGLGLLYALRIPLRLCENLAAVTVFLNSLTPKFYVALTGTSSLISGLIFIFEWWY
FHKHGTSFIEQVSVSHLQPLMGGTESSISEPGSPSRNRENETSRQNLSECKVWRNPLN
LFRGAEYRRYTWVTGKEPLTYYDMNLSAQDHQTFFTCDTDFLRPSDTVMQKAWRERNP
PARIKAAYQALELNNDCATAYVLLAEEEATTIVDAERLFKQALKAGETIYRQSQQCQH
QSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRIREAVKIMRDLMKEFPPLTMLNIHEN
LLESLLELQAYPDVQAVLAKYDDISLPKSAAICYTAALLKTRTVSEKFSPETASRRGL
STAEINAVEAIHRAVEFNPHVPKYLLEMKSLILPPEHILKRGDSEAIAYAFFHLQHWK
RIEGALNLLQCTWEGTFRMIPYPLEKGHLFYPYPSCTETADRELLPTFHHVSVYPKKE
LPLFIHFTAGFCSSTAMIAILTHQFPEIMGIFAKAVVGVKTQKENAD"
BASE COUNT 1262 a 930 c 984 g 1186 t
ORIGIN
1 cccagctcct ggcgcctgcg atagcggcaa gatggcggac cgtggcggcg tgggtgaagc
61 cgcagctgtt ggagcgtctc ctgcatctgt ccctggccta aacccgacgc taggctggag
121 ggagcgactg cgggccgggc tggcggggac tggggcctcg ttgtggttcg tggcggggct
181 ggggctgctt tacgccctga ggatcccttt gaggctgtgt gagaatttgg cagcggtgac
241 tgtattttta aattcattga cacccaaatt ctatgtggca cttacaggga cctcttcatt
301 gatatcagga ctaatattta tatttgaatg gtggtacttc cataagcatg gcacatcttt
361 tattgagcaa gtatctgtaa gccatttgca accactgatg ggaggaacag agagcagcat
421 ttcagaacca ggttctcctt cgaggaacag agaaaatgaa accagcagac agaatttgtc
481 agaatgtaag gtatggagaa accctctaaa tcttttcaga ggagcagaat ataggagata
541 cacttgggtg actggtaaag agccacttac atactatgac atgaacctgt cagctcagga
601 ccatcagacc tttttcacct gtgacacaga ttttttacgt ccttcagaca cagttatgca
661 gaaggcttgg agggaaagaa atcctccagc tcgaatcaaa gcagcctatc aagctttaga
721 attaaacaat gactgtgcca ctgcatatgt tctactggct gaggaagaag caacaactat
781 tgtagatgct gaaaggttat ttaaacaggc actcaaggca ggagaaacaa tttataggca
841 gtcacagcag tgccagcacc aaagtcctca gcatgaagct caactgagga gagataccaa
901 tgtactggta tatattaaaa gaagattggc aatgtgtgca agaaaattag gaagaataag
961 agaagcagta aaaataatga gagatttgat gaaagaattt cctcctctta ccatgttgaa
1021 catccatgaa aatctcttag aatcactttt agaattacag gcctatccag atgttcaggc
1081 agtcctagca aaatatgatg atataagcct tccaaagtca gcagcaatct gttacacagc
1141 agcactgttg aagacaagga ctgtttcaga aaaattctct ccagaaacag cctccagaag
1201 aggattaagc acagcagaaa ttaatgccgt ggaagcaatt catagagctg tggaatttaa
1261 tcctcatgtt ccaaaatatt tattagagat gaaaagttta attttacctc cagaacacat
1321 tctgaaacgg ggtgatagtg aagcaattgc ctatgctttc tttcatcttc agcactggaa
1381 acgaatagaa ggtgctctta atctgttaca gtgtacatgg gaaggcactt ttagaatgat
1441 tccatacccg ttagagaaag gacatctatt ttacccttat cccagctgca cagagacggc
1501 tgatagagag ctattaccta cctttcatca tgtttctgtt tacccaaaaa aggagcttcc
1561 tttgttcatc catttcacag caggattttg ctcttctaca gcaatgatag ccattctcac
1621 tcaccagttt cctgaaatca tgggtatttt tgctaaagct gtagtaggag ttaaaaccca
1681 aaaagaaaat gctgattaat tatattccca aaaatgaaaa cactgagaac catggaaaaa
1741 ctagtcctta cttggtgctg ggactctggt gcccccaacc ctgggcatcc tcaggctttg
1801 aggagaatac acaggatttg aagtcagaag acctaggttt gagttctggc tgagccacgc
1861 actgttcatg tgaccttgga caaatcacca aatttttctg aacagcatct gtaaagtgac
1921 agtaacccct acctcacagg gttgttgtga ggattacata tatgctaaag cattttgcat
1981 atgaaaaagc ttcttatgaa tattgttatt cctaggcaaa ccccccttgg aagccgtcaa
2041 aaaggacaac tgtagatgaa attgtcttcc ttttttcttc attcagctta gcctttctgt
2101 ttggccaggg ctacttacag gggctgttgg ggttgaagtc aagtcaccgc attttggctc
2161 ctttggtcaa agagaaagaa ctctaatgtc cagctgctcc atcgatatac tcatagaatg
2221 gaagtgagca aaggaaaatt ttaagccagg atagttaacc gttagggggc cagtgggaga
2281 atgcttgcct tgcatttgca catccagaat gactaaaaca tcttaagtaa atgaggaata
2341 gccaccgaga tgctcagaga taatataagc catgagtggg aagtgggaaa atgagtttgt
2401 caacgccctc tcttttctat ccctttacct ttgaggtcag ggacagggca tattactgac
2461 accccactgg ctattgccct atacctgcca atcacccaaa gaaaataata gcttctgaga
2521 aagctcaatt cactgtagca actgtgatat atttacccta ataaagccac cacttggtct
2581 tttccagtgc ttctctctta tggagatcat ccctggaatc caaagctctc cagttttcta
2641 acccagttaa gagttaaaaa caaccacagg tcatgagcag taggcttggc agttataccc
2701 catgcagtca taggagactg ctccatcatt ctcagcacat agggtgcaca tctcactatc
2761 tctggcatga accagccttg cgaacttata cagtctcagc cactctgctt tgatggtaat
2821 tcttcaccac tgatctctcc tcaccatgcc cttcctgcat ccttccccca accacccacc
2881 agaggagttc tggtccccaa accaaagagt tgcctgcagg ttggtaatgt gactttgtag
2941 atattccttg attaaagcca gaccctattg gtatcctttt tgaagtactg gatcgaaatc
3001 taattgcttt tttttttaat tgttggggag aggaggatga gcagaactcc tatgcagcct
3061 gagagaagtt ctctatgtgt ctgtatatgt acacctctgt gtgtgtgtgt gtaacctcat
3121 ggttgtgctc aggctgacag ggagggcaaa gagtgaaaag gaagcatctc tttcttgtta
3181 tccaacattg cttcaaagat gcccaacccc cgtagtagca ggcagttccc aagtggaggg
3241 tcggggcaga ggcctccacc aaggccatca ataaccaggt gtgagctaca ggtctctgtg
3301 taatgtgaag ctctcccgta tttcatttct gcacccaggg ggcggctctg caggattgct
3361 tacggagaac tctgtgtctg gcacctctct ccacaaggcc caggcgccca gggtcccacc
3421 gacctgccca ggaatgcatc acattgttct ctggtgctgt aatttggctg caggagctag
3481 gctgaatgcc tcccagggat gagaaacata ctctccctgg cgtcctccct tcgccccagc
3541 tagcttgagc ttctgcccta tgaccactga gtgcatttaa ataaaaacct cagaaagact
3601 gaggaaaaaa aaatcctaat tatctctctt ctgttaagcc atgtagagac tcgtgtcctg
3661 agtgggtctg agaatttggc aaagacttac tggttggtgt tcttgataag ggaagtgaga
3721 caaaggagaa gaaattactc cctgcaacag gaggaataga aatgaagcag tgagtgttca
3781 gaaattagat ctacaagaag ttttgcaaac agaccctcag ggccaggcaa tgtttgtttt
3841 tgttttttgt tttttgtttt ttttttttaa tctgaagccc ctgattttat ttttccagca
3901 tcactctaag gaagagtgtg gattagtgcc attattcagg gctggtatta ataaaagtta
3961 gcttttatct gcagggctag gttaaggctg gcattcttac ttttacatta aaaaaactgg
4021 ctacaggctg cgcagctgag gtacttcagt catgtgcctt ctctaaagga ttcttagatc
4081 cttaaaatat atagtatgtt ttaagtttgt atctaaatag cacttactgt aatgtattat
4141 acctaaatgt ttattaaaag ttagaagaaa tgagtaccaa caggaaggaa tggaagagag
4201 gagaggggct aagacattgc tgatctgagg gacagacctc tatcaaatag aagagggctg
4261 ggagaagggg tgattagaag cagagtgagg gaactaaatg gagccctgac tgcaccaaat
4321 aaagttctca ttttgctgct tgttccaaaa aaaaaaaaaa aa
//