LOCUS BC046208 1630 bp mRNA linear HUM 06-JUL-2004
DEFINITION Homo sapiens interferon induced with helicase C domain 1, mRNA
(cDNA clone IMAGE:6176741), complete cds.
ACCESSION BC046208
VERSION BC046208.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1630)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1630)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (31-JAN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 107 Row: m Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 27886567
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1630
/db_xref="H-InvDB:HIT000053018"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:6176741"
/tissue_type="Uterus, leiomyosarcoma"
/clone_lib="NIH_MGC_71"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1630
/gene="IFIH1"
/gene_synonym="Hlcd"
/gene_synonym="MDA-5"
/gene_synonym="MDA5"
/db_xref="GeneID:64135"
/db_xref="MIM:606951"
CDS 378..1043
/gene="IFIH1"
/gene_synonym="Hlcd"
/gene_synonym="MDA-5"
/gene_synonym="MDA5"
/codon_start=1
/product="IFIH1 protein"
/protein_id="AAH46208.1"
/db_xref="GeneID:64135"
/db_xref="MIM:606951"
/translation="MSNGYSTDENFRYLISCFRARVKMYIQVEPVLDYLTFLPAEVKE
QIQRTVATSGNMQAVELLLSTLEKGVWHLGWTREFVEALRRTGSPLAARYMNPELTDL
PSPSFENAHDEYLQLLNLLQPTLVDKLLVRDVLDKCMEEELLTIEDRNRIAAAENNGN
ESGVRELLKRIVQKENWFSAFLNVLRQTGNNELVQELTGSDCSESNAGICNFTEEDSS
NSA"
BASE COUNT 487 a 387 c 342 g 414 t
ORIGIN
1 caaactctgt aagaactgcc tgacagaaag ctggactcaa agctcctacc cgagtgtgca
61 gcaggatcgc cccggtccgg gaccccaggc gcacaccgca gagtccaaag tgccgcgcct
121 gccggccgca cctgcctgcc gcggccccgc gcgccgcccc gctgcccacc tgcccgcctg
181 cccacctgcc caggtgcgag tgcagccccg cgcgccggcc tgagagccct gtggacaacc
241 tcgtcattgt caggcacaga gcggtagacc ctgcttctct aagtgggcag cggacagcgg
301 cacgcacatt tcacctgtcc cgcagacaac agcaccatct gcttgggaga accctctccc
361 ttctctgaga aagaaagatg tcgaatgggt attccacaga cgagaatttc cgctatctca
421 tctcgtgctt cagggccagg gtgaaaatgt acatccaggt ggagcctgtg ctggactacc
481 tgacctttct gcctgcagag gtgaaggagc agattcagag gacagtcgcc acctccggga
541 acatgcaggc agttgaactg ctgctgagca ccttggagaa gggagtctgg caccttggtt
601 ggactcggga attcgtggag gccctccgga gaaccggcag ccctctggcc gcccgctaca
661 tgaaccctga gctcacggac ttgccctctc catcgtttga gaacgctcat gatgaatatc
721 tccaactgct gaacctcctt cagcccactc tggtggacaa gcttctagtt agagacgtct
781 tggataagtg catggaggag gaactgttga caattgaaga cagaaaccgg attgctgctg
841 cagaaaacaa tggaaatgaa tcaggtgtaa gagagctact aaaaaggatt gtgcagaaag
901 aaaactggtt ctctgcattt ctgaatgttc ttcgtcaaac aggaaacaat gaacttgtcc
961 aagagttaac aggctctgat tgctcagaaa gcaatgcagg tatttgtaat tttactgagg
1021 aagattcttc aaattctgcc tagtgattga gaattcaata aagcagaaag acacaatgct
1081 aaacaccaag atttttagaa tcaaaatttt aagagtggaa catatgtgat agatcatcta
1141 ttttatcacc ttaacaaatg aggaaattga tgcctgggaa aatatcaact gatcaaagac
1201 catttttcat ccaaccaaca ctctttctac taccttattt taaaaacaat atgactacca
1261 gaaattttat caagattatg taacattaaa tatacacaaa tacattggaa gaaagtattt
1321 tagtggttat aaaaaatctg ctgcatattc ttctgaacat ttttatacat tttaagcaat
1381 gtattaagca tttgataaaa ggattgtttt gtcaatatat ctcaacctta cctaatgtga
1441 gattttaaac agcattcaat aatagtaata acataacatt ttatagctcc ttctcctaca
1501 ttatttgtaa atctcactta aactgctatc ttatttttct tttcgtagta tgcatcctat
1561 gtttccaaaa atatcatatg aaagacaaat tgaaagttaa ctattaatta attataaaaa
1621 aaaaaaaaaa
//