LOCUS BC043006 2582 bp mRNA linear HUM 09-JUN-2008
DEFINITION Homo sapiens Leber congenital amaurosis 5-like, mRNA (cDNA clone
MGC:44448 IMAGE:5297703), complete cds.
ACCESSION BC043006
VERSION BC043006.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2582)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2582)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (09-JAN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 76 Row: o Column: 23
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 53832012.
FEATURES Location/Qualifiers
source 1..2582
/db_xref="H-InvDB:HIT000097474"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:44448 IMAGE:5297703"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..2582
/gene="LCA5L"
/db_xref="GeneID:150082"
/db_xref="HGNC:HGNC:1255"
CDS 531..2543
/gene="LCA5L"
/codon_start=1
/product="LCA5L protein"
/protein_id="AAH43006.1"
/db_xref="GeneID:150082"
/db_xref="HGNC:HGNC:1255"
/translation="MSLADLTKTNIDEHFFGVALENNRRSAACKRSPGTGDFSRNSNA
SNKSVDYSRSQCSCGSLSSQYDYSEDFLCDCSEKAINRNYLKQPVVKEKEKKKYNVSK
ISQSKGQKEISVEKKHTWNASLFNSQIHMIAQRRDAMAHRILSARLHKIKGLKNELAD
MHHKLEAILTENQFLKQLQLRHLKAIGKYENSQNNLPQIMAKHQNEVKNLRQLLRKSQ
EKERTLSRKLRETDSQLLKTKDILQALQKLSEDKNLAEREELTHKLSIITTKMDANDK
KIQSLEKQLRLNCRAFSRQLAIETRKTLAAQTATKTLQVEVKHLQQKLKEKDRELEIK
NIYSHRILKNLHDTEDYPKVSSTKSVQADRKILPFTSMRHQGTQKSDVPPLTTKGKKA
TGNIDHKEKSTEINHEIPHCVNKLPKQEDSKRKYEDLSGEEKHLEVQILLENTGRQKD
KKEDQEKKNIFVKEEQELPPKIIEVIHPERESNQEDVLVREKFKRSMQRNGVDDTLGK
GTAPYTKGPLRQRRHYSFTEATENLHHGLPASGGPANASNMRYSHSTGKHLSNREEME
LEHSDSGYEPSFGKSSRIKVKDTTFRDKKSSLMEELFGSGYVLKTDQSSPGVAKGSEE
PLQSKESHPLPPSQASTSHAFGDSKVTVVNSIKPSSPTEGKRKIII"
BASE COUNT 939 a 530 c 524 g 589 t
ORIGIN
1 agcggagcag gtaacggccc cgctgctgcc gtcgtccccc tcagccggtt accctgttac
61 agccccagct ctgggccctt ccggaccctc ctgctacgct ctttctgggc ttccagtatc
121 gccggtcact cagtcctcgc ccctgcctgc ctctctggcg ccccgccgtt tcctcctcgc
181 ggcacagttt gccaaggaac agctaccccg gctcggcagt gaccgggcgc tccggcgaca
241 cacgtactct caggcccgct gggcaggggg acggcctggg ccgaggtttt ttaaaatata
301 ttctttcttt aaaaagagac caaaacctgt caaaaaaata ctaccgtgga aagctcataa
361 atactacagt gtgaagaacc ctgtgcttat cttcagttta tcatcagaca tcttagggaa
421 gtttaataaa gaacaccagg agaattgaga attaaatgaa aaggtaaatc cttttaaaga
481 cctcagaaga tggatctgtt tgtttcaatc tgcttttgag gttgtttgct atgtctttgg
541 ctgatctaac aaaaacaaat atagatgagc atttcttcgg cgtggcatta gaaaacaata
601 ggaggtctgc agcatgcaag agaagcccag gcacaggcga tttttcacgg aacagtaatg
661 cttccaataa gagtgttgat tatagcagat ctcagtgctc ctgtggaagt ttaagttctc
721 agtatgatta ttcagaagac tttctctgtg attgttcaga aaaggctatt aatagaaatt
781 atttaaagca gcctgtggta aaagaaaagg agaagaaaaa gtataatgtt tctaaaatct
841 cccaatctaa aggccagaag gaaatatcag ttgaaaaaaa gcacacctgg aatgcatcac
901 tctttaattc tcaaatccat atgattgccc aaagaagaga tgctatggct catcgaatac
961 tctcagcaag gcttcataaa attaaaggac taaaaaatga attagctgat atgcatcata
1021 aattggaagc catccttaca gaaaaccaat ttttgaaaca acttcagctt aggcatttga
1081 aagctatagg aaaatatgag aattcacaaa ataatctacc tcaaattatg gctaaacatc
1141 agaatgaagt aaaaaattta aggcaactac ttaggaaatc ccaggaaaag gaaagaactc
1201 tatctaggaa acttagagaa actgacagcc agttactgaa gactaaagat atcttgcagg
1261 cactgcagaa actttctgaa gacaaaaacc ttgcagaaag ggaagaactc actcataaat
1321 tatctattat cacaacaaaa atggacgcaa atgacaaaaa aatacagagc ttggaaaaac
1381 aactgaggtt gaactgcaga gcctttagcc ggcagctggc tattgagact cggaagactt
1441 tagcagctca gacagctacc aagactctgc aggtggaagt aaaacacctt caacaaaaac
1501 ttaaggaaaa ggatcgtgag cttgaaatta aaaacatcta tagtcatcga atacttaaaa
1561 atttacatga cacagaggac tatccaaaag tttcttcaac aaaatcagtc caagcagaca
1621 gaaaaatttt gccattcaca agtatgagac accagggaac ccaaaaatca gatgttccac
1681 ctttgacaac taagggtaaa aaggcaacag gaaacatcga tcataaagaa aaatcaactg
1741 aaataaatca tgaaattcct cactgtgtga ataaactacc aaagcaagag gattctaaga
1801 gaaaatatga agatttatca ggggaagaga aacatttgga agtccaaata ctgctggaga
1861 atactggaag acaaaaagac aaaaaagaag accaagaaaa gaaaaacatt tttgtgaaag
1921 aagagcaaga actaccacca aaaataattg aagttattca tcctgaaaga gaaagcaatc
1981 aagaagatgt tctagtaaga gaaaagttta aaagaagcat gcagagaaat ggtgtggatg
2041 acacacttgg caaaggcact gctccctaca cgaaaggccc cctcagacaa agaagacatt
2101 actcattcac agaagcaact gaaaacctgc atcatgggct tcctgcttca ggggggccag
2161 ccaatgccag caacatgagg tacagtcata gtacaggcaa gcatctcagt aacagagagg
2221 aaatggagct agagcattct gacagtgggt atgagccctc atttggtaag tcttccagaa
2281 taaaagtgaa ggatacaact ttcagagata agaaaagcag tctcatggaa gaactctttg
2341 gatcaggcta tgtcttgaaa actgaccaat caagtcctgg tgttgcaaaa ggctcagagg
2401 agcctttgca aagtaaggag tcgcatcccc tgcctcccag tcaggcctcc accagccatg
2461 ctttcggaga ctctaaagta actgtggtaa attctattaa gccatcgtca cctacagaag
2521 gaaaaagaaa aataattatt taaatataat caatatccta atgcataaaa aaaaaaaaaa
2581 aa
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