LOCUS BC042418 3070 bp mRNA linear HUM 06-OCT-2003 DEFINITION Homo sapiens protein phosphatase 1D magnesium-dependent, delta isoform, mRNA (cDNA clone MGC:35090 IMAGE:5167004), complete cds. ACCESSION BC042418 VERSION BC042418.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3070) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3070) AUTHORS Strausberg,R. TITLE Direct Submission JOURNAL Submitted (02-JAN-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Life Technologies, Inc. cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Baylor College of Medicine Human Genome Sequencing Center Center code: BCM-HGSC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ Contact: amg@bcm.tmc.edu Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, A.N., Gibbs, R.A. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 52 Row: o Column: 2. FEATURES Location/Qualifiers source 1..3070 /db_xref="H-InvDB:HIT000052688" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:35090 IMAGE:5167004" /tissue_type="Brain, adult medulla" /clone_lib="NIH_MGC_119" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..3070 /gene="PPM1D" /gene_synonym="PP2C-DELTA" /gene_synonym="WIP1" /db_xref="GeneID:8493" /db_xref="MIM:605100" CDS 147..1439 /gene="PPM1D" /gene_synonym="PP2C-DELTA" /gene_synonym="WIP1" /codon_start=1 /product="PPM1D protein" /protein_id="AAH42418.1" /db_xref="GeneID:8493" /db_xref="MIM:605100" /translation="MAGLYSLGVSVFSDQGGRKYMEDVTQIVVEPEPTAEEKPSPRRS LSQPLPPRPSPAALPGGEVSGKGPAVAAREARDPLPDAGASPAPSRCCRRRSSVAFFA VCDGHGGREAAQFAREHLWGFIKKQKGFTSSEPAKVCAAIRKGFLACHLAMWKKLAEW PKTMTGLPSTSGTTASVVIIRGMKMYVAHVGDSGVVLGIQDDPKDDFVRAVEVTQDHK PELPKERERIEGLGGSVMNKSGVNRVVWKRPRLTHNGPVRRSTVIDQIPFLAVARALG DLWSYDFFSGEFVVSPEPDTSVHTLDPQKHKYIILGSDGLWNMIPPQDAISMCQDQEE KKYLMGEHGQSCAKMLVNRALGRWRQRMLRADNTSAIVICISPEVDNQGNFTNEDELY LNLTDSPSYNSQETCVMTPSPCSTPPVKDFGFELDSRK" misc_feature 345..1250 /gene="PPM1D" /gene_synonym="PP2C-DELTA" /gene_synonym="WIP1" /note="PP2C; Region: Protein phosphatase 2C. Protein phosphatase 2C is a Mn++ or Mg++ dependent protein serine/threonine phosphatase" /db_xref="CDD:pfam00481" BASE COUNT 905 a 658 c 696 g 811 t ORIGIN 1 cgcgcccccc cttctccggg tccgccccct cccccttctc ggcgtcgtcg aagataaaca 61 atagttggcc ggcgagcgcc tagtgtgtct cccgccgccg gattcggcgg gctgcgtggg 121 accggcggga tcccggccag ccggccatgg cggggctgta ctcgctggga gtgagcgtct 181 tctccgacca gggcgggagg aagtacatgg aggacgttac tcaaatcgtt gtggagcccg 241 aaccgacggc tgaagaaaag ccctcgccgc ggcggtcgct gtctcagccg ttgcctccgc 301 ggccgtcgcc ggccgccctt cccggcggcg aagtctcggg gaaaggccca gcggtggcag 361 cccgagaggc tcgcgaccct ctcccggacg ccggggcctc gccggcacct agccgctgct 421 gccgccgccg ttcctccgtg gcctttttcg ccgtgtgcga cgggcacggc gggcgggagg 481 cggcacagtt tgcccgggag cacttgtggg gtttcatcaa gaagcagaag ggtttcacct 541 cgtccgagcc ggctaaggtt tgcgctgcca tccgcaaagg ctttctcgct tgtcaccttg 601 ccatgtggaa gaaactggcg gaatggccaa agactatgac gggtcttcct agcacatcag 661 ggacaactgc cagtgtggtc atcattcggg gcatgaagat gtatgtagct cacgtaggtg 721 actcaggggt ggttcttgga attcaggatg acccgaagga tgactttgtc agagctgtgg 781 aggtgacaca ggaccataag ccagaacttc ccaaggaaag agaacgaatc gaaggacttg 841 gtgggagtgt aatgaacaag tctggggtga atcgtgtagt ttggaaacga cctcgactca 901 ctcacaatgg acctgttaga aggagcacag ttattgacca gattcctttt ctggcagtag 961 caagagcact tggtgatttg tggagctatg atttcttcag tggtgaattt gtggtgtcac 1021 ctgaaccaga cacaagtgtc cacactcttg accctcagaa gcacaagtat attatattgg 1081 ggagtgatgg actttggaat atgattccac cacaagatgc catctcaatg tgccaggacc 1141 aagaggagaa aaaatacctg atgggtgagc atggacaatc ttgtgccaaa atgcttgtga 1201 atcgagcatt gggccgctgg aggcagcgta tgctccgagc agataacact agtgccatag 1261 taatctgcat ctctccagaa gtggacaatc agggaaactt taccaatgaa gatgagttat 1321 acctgaacct gactgacagc ccttcctata atagtcaaga aacctgtgtg atgactcctt 1381 ccccatgttc tacaccacca gtcaaggatt ttggatttga actcgattca agaaagtgat 1441 gtaacttatt atcagagagc catctttaca tcaatactaa tctgaatgcc agccatgtgt 1501 acagcactaa taaaaagtca ctggaggagg atccatggcc aagggtgaat tctaaggacc 1561 atatacctgc cctggttcgt agcaatgcct tctcagagaa ttttttagag gtttcagctg 1621 agatagctcg agagaatgtc caaggtgtag tcataccctc aaaagatcca gaaccacttg 1681 aagaaaattg cgctaaagcc ctgactttaa ggatacatga ttctttgaat aatagccttc 1741 caattggcct tgtgcctact aattcaacaa acactgtcat ggaccaaaaa aatttgaaga 1801 tgtcaactcc tggccaaatg aaagcccaag aaattgaaag aacccctcca acaaacttta 1861 aaaggacatt agaagagtcc aattctggcc ccctgatgaa gaagcataga cgaaatggct 1921 taagtcgaag tagtggtgct cagcctgcaa gtctccccac aacctcacag cgaaagaact 1981 ctgttaaact caccatgcga cgcagactta ggggccagaa gaaaattgga aatcctttac 2041 ttcatcaaca caggaaaact gtttgtgttt gctgaaatgc atctgggaaa tgaggttttt 2101 ccaaacttag gatataagag ggctttttaa atttggtgcc gatgttgaac tttttttaag 2161 gggagaaaat taaaagaaat atacagtttg actttttgga attcagcagt tttatcctgg 2221 ccttgtactt gcttgtattg taaatgtgga ttttgtagat gttagggtat aagttgctgt 2281 aaaatttgtg taaatttgta tccacacaaa ttcagtctct gaatacacag tattcagagt 2341 ctctgataca cagtaattgt gacaataggg ctaaatgttt aaagaaatca aaagaatcta 2401 ttagatttta gaaaaacatt taaacttttt aaaatactta ttaaaaaatt tgtataagcc 2461 acttgtcttg aaaactgtgc aactttttaa agtaaattat taagcagact ggaaaagtga 2521 tgtattttca tagtgacctg tgtttcactt aatgtttctt agagccaagt gtcttttaaa 2581 cattattttt tatttctgat ttcataattc agaactaaat ttttcataga agtgttgagc 2641 catgctacag ttagtcttgt cccaattaaa atactatgca gtatctctta catcagtagc 2701 atttttctaa aaccttagtc atcagatatg cttactaaat cttcagcata gaaggaagtg 2761 tgtttgccta aaacaatcta aaacaattcc cttctttttc atcccagacc aatggcatta 2821 ttaggtctta aagtagttac tcccttctcg tgtttgctta aaatatgtga agttttcctt 2881 gctatttcaa taacagatgg tgctgctaat tcccaacatt tcttaaatta ttttatatca 2941 tacagttttc attgattata tgggtatata ttcatctaat aaatcagtga actgttaaaa 3001 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa 3061 aaaaaaaaaa //