LOCUS BC042180 995 bp mRNA linear HUM 27-SEP-2007 DEFINITION Homo sapiens ATPase, class VI, type 11B, mRNA (cDNA clone IMAGE:5395206), complete cds. ACCESSION BC042180 VERSION BC042180.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 995) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 995) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (02-JAN-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: DCTD/DTP cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 78 Row: l Column: 17 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 62632749 This clone has the following problem: The cds is short compared to the longest cds in the locus. FEATURES Location/Qualifiers source 1..995 /db_xref="H-InvDB:HIT000052674" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:5395206" /tissue_type="Breast, mammary adenocarcinoma." /clone_lib="NIH_MGC_87" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..995 /gene="ATP11B" /gene_synonym="ATPIF" /gene_synonym="ATPIR" /gene_synonym="DKFZP434J238" /gene_synonym="DKFZP434N1615" /db_xref="GeneID:23200" /db_xref="HGNC:HGNC:13553" /db_xref="MIM:605869" CDS 258..845 /gene="ATP11B" /gene_synonym="ATPIF" /gene_synonym="ATPIR" /gene_synonym="DKFZP434J238" /gene_synonym="DKFZP434N1615" /codon_start=1 /product="ATP11B protein" /protein_id="AAH42180.1" /db_xref="GeneID:23200" /db_xref="HGNC:HGNC:13553" /db_xref="MIM:605869" /translation="MWRWIRQQLGFDPPHQSDTRTIYVANRFPQNGLYTPQKFIDNRI ISSKYTVWNFVPKNLFEQFRRVANFYFLIIFLVQLMIDTPTSPVTSGLPLFFVITVTA IKQGYEDWLRHNSDNEVNGAPVYVVRSGGLVKTRSKNIRVGDIVRIAKDEIFPADLVL LSSDRLDGSCHVTTASLDGETNLKVCLHMFEYCSW" BASE COUNT 275 a 206 c 262 g 252 t ORIGIN 1 caataatgaa ggtggctgcg gcgcggcggc aggctcagct gcgccgggcg ggggcggcgc 61 tggggccgcg cctgtaggac tcggggccga cgccgcggga tggggacgcg gcgcggggag 121 tgaggcagtg gcggcggcgg cggtaagcgg aacttcggcc cgaggggctc gcccgctccc 181 gcctctgtct tgtcggcctc cacctgcagc cccgcggccc ccgcgccccg cgggacccgg 241 acggcgacga cgggggaatg tggcgctgga tccggcagca gctgggtttt gacccaccac 301 atcagagtga cacaagaacc atctacgtag ccaacaggtt tcctcagaat ggcctttaca 361 cacctcagaa atttatagat aacaggatca tttcatctaa gtacactgtg tggaattttg 421 ttccaaaaaa tttatttgaa cagttcagaa gagtggcaaa cttttatttt cttattatat 481 ttttggttca gcttatgatt gatacaccta ccagtccagt taccagtgga cttccattat 541 tctttgtgat aacagtaact gccataaagc agggatatga agattggtta cggcataact 601 cagataatga agtaaatgga gctcctgttt atgttgttcg aagtggtggc cttgtaaaaa 661 ctagatcaaa aaacattcgg gtgggtgata ttgttcgaat agccaaagat gaaatttttc 721 ctgcagactt ggtgcttctg tcctcagatc gactggatgg ttcctgtcac gttacaactg 781 ctagtttgga cggagaaact aacctgaagg tttgcttgca tatgtttgag tattgctctt 841 ggtgaacaaa gtgtctttgg attataatta tacttaactt tggttaaagt agtaaagttt 901 gaccagatta aggggaagtt tttaaaatta ctatttcaaa aataaaaagg ttttaagaaa 961 gaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaa //