LOCUS BC042045 3717 bp mRNA linear HUM 17-AUG-2004
DEFINITION Homo sapiens GTPase activating Rap/RanGAP domain-like 1, mRNA (cDNA
clone IMAGE:5527017), partial cds.
ACCESSION BC042045
VERSION BC042045.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3717)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3717)
AUTHORS Director MGC Project.
TITLE Direct Submission
JOURNAL Submitted (23-DEC-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 88 Row: d Column: 9.
FEATURES Location/Qualifiers
source 1..3717
/db_xref="H-InvDB:HIT000097077"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5527017"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_72"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..3717
/gene="GARNL1"
/gene_synonym="DKFZp566D133"
/gene_synonym="DKFZp667F074"
/gene_synonym="GRIPE"
/gene_synonym="KIAA0884"
/gene_synonym="TULIP1"
/db_xref="GeneID:253959"
CDS <1..2673
/gene="GARNL1"
/gene_synonym="DKFZp566D133"
/gene_synonym="DKFZp667F074"
/gene_synonym="GRIPE"
/gene_synonym="KIAA0884"
/gene_synonym="TULIP1"
/codon_start=1
/product="GARNL1 protein"
/protein_id="AAH42045.1"
/db_xref="GeneID:253959"
/translation="HAYKLICNTMKRRQDVSPNRDFLTHFYNIMHCGLLHIDQDIVNT
IIKHCSPQFFSLGLPGATMLIMDFIVAAGRVASSAFLNAPRVEAQVLLGSLVCFPNLY
CELPSLHPNIPDVAVSQFTDVKELIIKTVLSSARDEPSGPARCVALCSLGIWICEELV
HESHHPQIKEALNVICVSLKFTNKTVAHVACNMLHMLVHYVPRLQIYQPDSPLKIIQI
LIATITHLLPSTEASSYEMDKRLVVSLLLCLLDWIMALPLKTLLQPFHATGAESDKTE
KSVLNCIYKVLHGCVYGAQCFSNPRYFPMSLSDLASVDYDPFMHLESLKEPEPLHSPD
SERSSKLQPVTEVKTQMQHGLISIAARTVITHLVNHLGHYPMSGGPAMLTSQVCENHD
NHYSESTELSPELFESPNIQFFVLNNTTLVSCIQIRSEENMPGGGLSAGLASANSNVR
IIVRDLSGKYSWDSAILYGPPPVSGLSEPTSFMLSLSHQEKPEEPPTSNECLEDITVK
DGLSLQFKRFRETVPTWDTIRDEEDVLDELLQYLGVTSPECLQRTGISLNIPAPQPVC
ISEKQENDVINAILKQHTEEKEFVEKHFNDLNMKAVEQDEPIPQKPQSAFYYCRLLLS
ILGMNSWDKRRSFHLLKKNEKLLRELRNLDSRQCRETHKIAVFYVAEGQEDKHSILTN
TGGSQAYEDFVAGLGWEVNLTNHCGFMGGLQKNKSTGLTTPYFATSTVEVIFHVSTRM
PSDSDDSLTKKLRHLGNDEVHIVWSEHTRDYRRGIIPTEFGDVLIVIYPMKNHMFSIQ
IMKKPEVPFFGPLFDGAIVNGKVLPIMVRATAINASRALKSLIPLYQNFYEERARYLQ
TIVQHHLEPTTFEDFAAQVFSPAPYHHLPSDADH"
BASE COUNT 1142 a 726 c 677 g 1172 t
ORIGIN
1 catgcatata aacttatttg taatacaatg aaaagaagac aagatgtttc tccaaataga
61 gattttctaa cacatttcta caatataatg cattgtggat tacttcatat tgaccaggat
121 attgtcaata caatcatcaa acactgctca cctcaatttt tttcacttgg tttgcctggt
181 gccacaatgc ttattatgga ttttattgta gcagctggta gagtggcttc ttcagctttt
241 ctcaatgcac caagagtaga agcacaagtt cttctgggat ctttggtttg ctttcccaac
301 ttatattgtg aactgccttc tcttcatccc aacattcctg atgttgctgt gtctcagttt
361 acagatgtta aggaacttat aatcaaaact gtattaagct cggcaagaga tgagccctct
421 ggtcctgcac gatgtgtagc actttgtagt ttaggtattt ggatttgtga agaactagtc
481 catgagtctc atcatcctca aattaaggaa gctctgaatg tgatttgtgt ttccttaaag
541 tttactaata aaacagtagc ccacgtagct tgtaacatgc ttcacatgct ggttcattat
601 gtacctagac ttcagattta ccagcctgat tctcccttga aaattattca aatcctaata
661 gctaccatca cccatctttt accaagtaca gaggcttcat cttatgaaat ggacaagagg
721 ttggtagtat ctttacttct ctgccttctg gactggatca tggccttacc tctaaagaca
781 ctgctccaac catttcatgc tacgggagca gaaagcgata aaacagaaaa atctgttctc
841 aattgcattt ataaggtttt acatgggtgt gtttatggag ctcagtgttt tagcaatcca
901 aggtattttc ccatgagcct ctctgatttg gcatctgtag attatgatcc ttttatgcat
961 ttggaaagtc tgaaagagcc tgagcctctg cactctcctg actcagaacg atcttctaaa
1021 ctccagccag taacagaagt gaaaactcaa atgcagcatg gattaatctc tatagcagcc
1081 cgcactgtta ttacacatct ggtaaatcac ctgggccatt atccaatgag cggtggtcct
1141 gctatgctaa caagtcaggt gtgtgaaaat cacgacaatc attacagtga aagtactgaa
1201 ctttctcctg aactctttga gagtccaaat atccagttct ttgtgttaaa taatacaacc
1261 ttagtgtcct gtatccagat cagatcagaa gagaatatgc ctggaggagg tttatctgct
1321 ggccttgcat cagccaattc aaatgtcaga atcatagtac gtgatctctc tggaaaatat
1381 tcatgggatt ctgctatact gtatggccca cctcctgtaa gtggcttgtc agaacctaca
1441 tctttcatgc tttcattgtc tcaccaagag aagccagaag agcctccgac atctaatgaa
1501 tgcttagaag atataaccgt aaaagatgga ctttctctcc agtttaaaag atttagagaa
1561 actgtaccaa cttgggatac aataagagat gaagaagatg ttcttgatga gctcttgcag
1621 tatttgggtg ttactagtcc tgaatgctta cagagaactg gaatctcact taatattcct
1681 gctccacaac ctgtgtgcat ttctgaaaaa caagaaaatg atgttattaa tgctatcctt
1741 aagcaacata cagaagaaaa agaatttgtt gagaagcact ttaatgactt aaacatgaaa
1801 gctgtggaac aagatgaacc aatacctcaa aaacctcagt cagcatttta ttattgcaga
1861 ttgcttctta gtatattggg aatgaattcc tgggacaaac ggaggagctt tcatctcctg
1921 aagaaaaatg aaaagctact tagagaactt aggaacttgg attcaaggca gtgccgagag
1981 acacacaaga ttgcagtatt ttatgttgct gaaggacaag aagacaaaca ctccattctc
2041 accaatacag gaggaagtca agcatatgaa gattttgtag ctggtcttgg ttgggaggta
2101 aatcttacaa accattgtgg ttttatggga ggactacaaa aaaacaaaag cactggattg
2161 accactccat attttgctac ctctacagta gaggtaatat ttcacgtgtc aacaagaatg
2221 ccttctgatt ctgatgattc tttgaccaaa aaattgagac atttgggaaa tgatgaagtg
2281 cacattgttt ggtcagagca tactagagac tacaggagag gaattattcc cacagaattt
2341 ggtgatgtcc ttattgtaat atatccaatg aaaaatcaca tgttcagtat tcagataatg
2401 aaaaaaccag aggttccctt ctttggtccc ctttttgatg gtgctattgt gaatggaaag
2461 gttctaccca ttatggttag agcaacagct ataaatgcaa gccgtgctct gaaatctctg
2521 attccattgt atcaaaactt ctatgaggag agagcacgat acctgcaaac aattgtccag
2581 caccacttag aaccaacaac atttgaagat tttgcagcac aggttttttc tccagctccc
2641 taccaccatt taccatctga tgccgatcat taaatatcag ttctgtttat ctgaaggctc
2701 ctacccagag attctaccca gtgaaactcc cacagcaacg caggtagatg gggctgacct
2761 ggcctctcca atgtctcctc gaactagcaa aagccgcatg tccatgaagc tgcgtcgttc
2821 ctctggctca gccaataaat cctaaggaga caagcagccc agcagtgatc agcagtagcc
2881 accttagcac gaacataggg ttaacccttt caggccttca tgtctgccat aacatgcatg
2941 tttcttcctg tacatttatt tgagaaaaca ctggatttaa ataattttaa ataatttgta
3001 gcttaatatt aaagatttaa gttatttatt gtttcatttt ttttcccaca atccaagctg
3061 ccatattttg agggcagggg gagttttatt ctacaccctt taccttccta gataattatg
3121 tctaagtagt tttatcttta atttcatggt taactgtgag ccaaaataca attggacaat
3181 tagtctcatt atttattgtg ccccattgca actttatggt tcaataaata tataattttt
3241 tacaaatgta aaattttaca tttaagcatt tgtaaagtta cagcaaaaga tgtacctgtt
3301 aatacacaga atgtgtacag attatttgtt atgacaataa aacactcaaa ataaatggtc
3361 tttagcatct caaattccaa ctgaaatcat tttagtatta actcttcttc ccaaagcaat
3421 gtctcatttc ttggctgtgc aggtgatgcc atgttatatc caataactag aaaaatcact
3481 gtgctgaact tttatgttta gcttccaagt atttttctaa tgttttgcat ttcaagtggt
3541 atcactgtta aatgccattt gttttcagat tgtggccttt tattattggc tgctagatcc
3601 tggtgtttct atgttctttt ttaagcacca aaaagaagat ggggaagaaa agaaggaaaa
3661 ttttctgata taaatatgtt gttcaaatta tgagtattat ttaaaaaaaa aaaaaaa
//