LOCUS BC041485 2175 bp mRNA linear HUM 16-MAR-2005
DEFINITION Homo sapiens syntaxin binding protein 4, mRNA (cDNA clone
IMAGE:5491176), complete cds.
ACCESSION BC041485
VERSION BC041485.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2175)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2175)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (16-DEC-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC041485.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Steve Jones, Sarah Barber, Mabel Brown-John, Yaron Butterfield,
Andy Chan, Steve S. Chand, William Chow, Alison Cloutier, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Amara Masson, Mike R. Mayo, Josh Moran, Ryan Morin,
Teika Olson, Diana Palmquist, Anca Petrescu, Anna Liisa Prahbu,
Parvaneh Saeedi, JR Santos, Angelique Schnerch, Ursula Skalska,
Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie
Schein, Asim Siddiqui, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 87 Row: p Column: 7
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..2175
/db_xref="H-InvDB:HIT000052560"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5491176"
/tissue_type="Eye, retinoblastoma"
/clone_lib="NIH_MGC_67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2175
/gene="STXBP4"
/gene_synonym="MGC50337"
/gene_synonym="Synip"
/db_xref="GeneID:252983"
CDS 276..1013
/gene="STXBP4"
/gene_synonym="MGC50337"
/gene_synonym="Synip"
/codon_start=1
/product="STXBP4 protein"
/protein_id="AAH41485.1"
/db_xref="GeneID:252983"
/translation="MIGVSFEEAKSIITGAKLSTRLESAWEIAFIRQKSDNIQPENLS
CTSLIEASGEYGPQASTLSLFSSPPEILIPKTSSTPKTNNDILSSCEIKTGYNKTVQI
PITSENSTVGLSNTDVASAWTENYGLQEKISLNPSVRFKAEKLEMALNYLGIQPTKEQ
HQALRQQVQADSKGTVSFGDFVQVARNLFCLQLDEVNVGAHEISNILDSQLLPCDSSE
ADEMERLKCERDDALKEVNTLKWPGQN"
BASE COUNT 710 a 389 c 393 g 683 t
ORIGIN
1 ggccgggttg ccagattacg ggaaagccat ttaagaagtt cctggaataa tattagtcag
61 agtaatatag gatctgcagg aagtgtctca agatagttgg aaaagaagaa tttctagact
121 cttcatcaag atcttcattt atacagctgt taaatccaag gctactttgg tgaaagcatg
181 aataaaaata catctactgt agtatcaccc agtctacttg aaaagatggt cgtttgaagc
241 caggagatca acttgtctca gtcaacaagg aatctatgat tggtgtatca tttgaagaag
301 caaaaagcat aattaccgga gccaagttga gtactaggtt agaatctgct tgggagatag
361 cattcataag acaaaaatcc gacaacattc agccagaaaa tctgtcatgt acatcactta
421 tagaagcttc aggagaatat ggacctcaag cctcaacatt aagtcttttt tcttctcctc
481 ctgaaatact aatcccaaag acctcatcca ctcccaaaac aaataatgac attttatctt
541 cttgtgagat aaaaactgga tacaacaaaa cagtacagat tccaattact tcagaaaaca
601 gtactgtggg tttgtctaat acagatgttg cttctgcctg gactgaaaat tatgggctac
661 aagaaaagat ctccctaaat ccctctgttc gctttaaggc agagaaactg gaaatggctc
721 taaattatct tggtattcag cccacaaagg aacaacacca agccctgaga cagcaagtac
781 aagcagactc aaaagggaca gtgtcttttg gagattttgt ccaggttgcc agaaacttgt
841 tttgcttgca gttggatgaa gtaaatgttg gtgcacatga aatttccaat atattagatt
901 cacagcttct tccttgtgat tcttcagaag cagatgaaat ggaaaggctc aagtgtgaaa
961 gagatgatgc cttgaaagaa gtaaatacac ttaagtggcc agggcagaat tagatgaaga
1021 gccaataaag caagtcgtgg caattttgga tcctgtgagt tctttgggaa atacattttt
1081 tttcatgtgc agggctattc ttaagggaca tcatgttttg ctaacgtaat ttggaattaa
1141 tattatttta gagaggaaaa aaacacacat atcccaaata tactgtaaca tttttcttct
1201 ctttttttgt ttgtttggtt ttttgattct tgtttttgtt ttgtgttttt gagacggggt
1261 cgcactctgt cgcccaggct ggagtgcaat actgcaatca cgtctcactg cagcctcaac
1321 ctcctgggtt caagtgattc tcccacctca acctcccaag taactgggac aacatgtcca
1381 tgccaccatg ctcaactaat ttttttttaa atttttattt tgtagagatg gtgtctcact
1441 attttgttca gactggtctc aaacacctgg gctcaaatga cccacctacc tcagcctctc
1501 aaagtgctgg gattacaggt gtgagccacc atgtctggcc ttgattctct ttatgtggtt
1561 tcattctgtt tttagaagaa tattacattt aaattatatc ctaattttta tagaaagcta
1621 tattttccaa atctttagga aaagcaacat aactacttga tttaccacta attcgtcata
1681 ggcacatatt tttaaaatta ttttattaaa taaggtatag tatattgata attatttaat
1741 ttttattaaa tagaaaatat ttacaccaaa aggaaagaaa atttgttttg ctaccttagt
1801 ttttataatc tcaacctcta gaggaagcca ttgttgcaaa tatattattt atcttttcat
1861 agatttttct ctacacagaa aattatattt tttaaaaata ggcagggcat gatggctgac
1921 acctttaatc gcagtacttt gggaggctga ggcaagagga ttacttgagc tcaggagttt
1981 aacatcagcc tgggcaacat agcaggaccc catctctact atttaaaaca taaaaacaaa
2041 aataaataaa tatatgtata tgtggggaca gggagtatgt gagaaatttc tgtactttcc
2101 cttcaatttt gctatgaatc caaaactgct tcaaaaaata ataaagcctt aaaaaatttt
2161 aaaaaaaaaa aaaaa
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