LOCUS BC041369 2145 bp mRNA linear HUM 12-JAN-2007 DEFINITION Homo sapiens sphingomyelin synthase 2, mRNA (cDNA clone MGC:43860 IMAGE:5273650), complete cds. ACCESSION BC041369 VERSION BC041369.2 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2145) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2145) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (16-DEC-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Sep 16, 2003 this sequence version replaced BC041369.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Miklos Palkovits, M.D., Ph.D. cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki Toshiyuki and Piero Carninci (RIKEN) cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 75 Row: e Column: 15 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 37059795. FEATURES Location/Qualifiers source 1..2145 /db_xref="H-InvDB:HIT000052548" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:43860 IMAGE:5273650" /tissue_type="Testis" /clone_lib="NIH_MGC_97" /lab_host="DH10B" /note="Vector: pBluescriptR" gene 1..2145 /gene="MGC26963" /gene_synonym="SMS2" /db_xref="GeneID:166929" CDS 633..1730 /gene="MGC26963" /gene_synonym="SMS2" /codon_start=1 /product="sphingomyelin synthase 2" /protein_id="AAH41369.1" /db_xref="GeneID:166929" /translation="MDIIETAKLEEHLENQPSDPTNTYARPAEPVEEENKNGNGKPKS LSSGLRKGTKKYPDYIQIAMPTESRNKFPLEWWKTGIAFIYAVFNLVLTTVMITVVHE RVPPKELSPPLPDKFFDYIDRVKWAFSVSEINGIILVGLWITQWLFLRYKSIVGRRFC FIIGTLYLYRCITMYVTTLPVPGMHFQCAPKLNGDSQAKVQRILRLISGGGLSITGSH ILCGDFLFSGHTVTLTLTYLFIKEYSPRHFWWYHLICWLLSAAGIICILVAHEHYTID VIIAYYITTRLFWWYHSMANEKNLKVSSQTNFLSRAWWFPIFYFFEKNVQGSIPCCFS WPLSWPPGCFKSSCKKYSRVQKIGEDNEKST" BASE COUNT 644 a 424 c 456 g 621 t ORIGIN 1 aataaatgga gtttcaaaat cacaagcttc tttcccacat gaacataaga ctaggagcac 61 atatggaaga gtaaagttga agggaatttg gatgatgatt tggcaagatg ctgtaagtgg 121 attaggcaag gctgctaaag agagacagga aatggctgtg ttagtgcttc ggacctccgt 181 tagaagtagc agttcatggt gttgaaggtt tgttgttgaa aataccttcc tgaggcacct 241 cttcattgtg cttattcttc ccacaacatt gtgccaagac actgtcaagc ctgggcctgt 301 caaagcctgg gatgtcaaag gcctgggtct ttctcatcct gctgtaatgt attgatagct 361 gggggctctg cagaaggaca agggaaaggt gggatagtaa catctttttg agggaagaat 421 tggcttcctt tcttgaaagt ggtgaaggta cagcatatag ctgcatggaa gaaacagtaa 481 tcggatggct accttctaca ttttgtatta ggaaacaaag tccattgtaa gagtccatgt 541 tgatcttgga aatagaagga ttgaaaaaag ctaaatttcc acaaagaaca agaacttgac 601 catctccttt ttgatctgaa gactagggga caatggatat catagagaca gcaaaacttg 661 aagaacattt ggaaaatcaa cccagtgatc ctacgaacac ttatgcaaga cccgctgaac 721 ctgttgaaga agaaaacaaa aatggcaatg gtaaacccaa gagcttatcc agtgggctgc 781 gaaaaggcac caaaaagtac ccggactata tccaaattgc tatgcccact gaatcaagga 841 acaaatttcc actagagtgg tggaaaacgg gcattgcctt catatatgca gttttcaacc 901 tcgtcttgac aaccgtcatg atcacagttg tacatgagag ggtccctccc aaggagctta 961 gccctccact cccagacaag ttttttgatt acattgatag ggtgaaatgg gcattttctg 1021 tatcagaaat aaatgggatt atattagttg gattatggat cacccagtgg ctgtttctga 1081 gatacaagtc aatagtggga cgcagattct gttttattat tggaacttta tacctgtatc 1141 gctgcattac aatgtatgtt actactctac ctgtgcctgg aatgcatttc cagtgtgctc 1201 caaagctcaa tggagactct caggcaaaag ttcaacggat tctacgattg atttctggtg 1261 gtggattgtc cataactgga tcacatatct tatgtggaga cttcctcttc agcggtcaca 1321 cggttacgct gacactgact tatttgttca tcaaagaata ttcgcctcgt cacttctggt 1381 ggtatcattt aatctgctgg ctgctgagtg ctgccgggat catctgcatt cttgtagcac 1441 acgaacacta cactatcgat gtgatcattg cttattatat cacaacacga ctgttttggt 1501 ggtaccattc aatggccaat gaaaagaact tgaaggtctc ttcacagact aatttcttat 1561 ctcgagcatg gtggttcccc atcttttatt tttttgagaa aaatgtacaa ggctcaattc 1621 cttgctgctt ctcctggccg ctgtcttggc ctcctggctg cttcaaatca tcatgcaaaa 1681 agtattcacg ggttcagaag attggtgaag acaatgagaa atcgacctga ggagcaaaac 1741 aaaggcatca gctcttacac caaaagagtt aacgctgtaa ccaaaggtat agttttgttt 1801 tttattttag gagaactgac tggtaaatga agaaatggac caaattttgt gtaaacgatt 1861 agaaagatga acaaagtatt gccctttgac tggttttctt cttcatcctg agaaagatac 1921 attctcttgc agctcttcat tcattggtga caagccccca ccccgggact ttactaatga 1981 gcttgttaaa gaggtgccaa agaacatatt cctcctttct ttattctttc tccaccaaaa 2041 ccctctactt cagaattttt tcaggatatt tttcagccca aggtcagaag aatgtgttaa 2101 tattttaaat aaaatatctg gacatctaca aaaaaaaaaa aaaaa //