LOCUS BC040956 3215 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens zinc finger CCCH-type, antiviral 1, mRNA (cDNA clone
MGC:48898 IMAGE:5531412), complete cds.
ACCESSION BC040956
VERSION BC040956.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3215)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3215)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (06-DEC-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 84 Row: g Column: 4
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 33946332.
FEATURES Location/Qualifiers
source 1..3215
/db_xref="H-InvDB:HIT000052470"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:48898 IMAGE:5531412"
/tissue_type="Uterus, leiomyosarcoma"
/clone_lib="NIH_MGC_71"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..3215
/gene="ZC3HAV1"
/gene_synonym="FLB6421"
/gene_synonym="FLJ13288"
/gene_synonym="MGC48898"
/gene_synonym="ZAP"
/gene_synonym="ZC3H2"
/gene_synonym="ZC3HDC2"
/db_xref="GeneID:56829"
/db_xref="HGNC:HGNC:23721"
/db_xref="MIM:607312"
CDS 389..2488
/gene="ZC3HAV1"
/gene_synonym="FLB6421"
/gene_synonym="FLJ13288"
/gene_synonym="MGC48898"
/gene_synonym="ZAP"
/gene_synonym="ZC3H2"
/gene_synonym="ZC3HDC2"
/codon_start=1
/product="zinc finger CCCH-type, antiviral 1"
/protein_id="AAH40956.1"
/db_xref="GeneID:56829"
/db_xref="HGNC:HGNC:23721"
/db_xref="MIM:607312"
/translation="MADPEVCCFITKILCAHGGRMALDALLQEIALSEPQLCEVLQVA
GPDRFVVLETGGEAGITRSVVATTRARVCRRKYCQRPCDNLHLCKLNLLGRCNYSQSE
RNLCKYSHEVLSEENFKVLKNHELSGLNKEELAVLLLQSDPFFMPEICKSYKGEGRQQ
ICNQQPPCSRLHICDHFTRGNCRFPNCLRSHNLMDRKVLAIMREHGLNPDVVQNIQDI
CNSKHMQKNPPGPRAPSSHRRNMAYRARSKSRDRFFQGSQEFLASASASAERSCTPSP
DQISHRASLEDAPVDDLTRKFTYLGSQDRARPPSGSSKATDLGGTSQAGTSQRFLENG
SQEDLLHGNPGSTYLASNSTSAPNWKSLTSWTNDQGARRKTVFSPTLPAARSSLGSLQ
TPEAVTTRKGTGLLSSDYRIINGKSGTQDIQPGPLFNNNADGVATDITSTRSLNYKST
SSGHREISSPRIQDAGPASRDVQATGRIADDADPRVALVNDSLSDVTSTTSSRVDDHD
SEEICLDHLCKGCPLNGSCSKVHFHLPYRWQMLIGKTWTDFEHMETIEKGYCNPGIHL
CSVGSYTINFRVMSCDSFPIRRLSTPSSVTKPANSVFTTKWIWYWKNESGTWIQYGEE
KDKRKNSNVDSSYLESLYQSCPRGVVPFQAGSRNYELSFQGMIQTNIASKTQKDVIRR
PTFVPQWYVQQMKRGPE"
BASE COUNT 804 a 818 c 820 g 773 t
ORIGIN
1 cttttagttt ctcttctttc taaagaaggc tcgcggagcc cggctggaga acctcaccct
61 cgccgagcct agaaccgaga gggggccacc ccaggcggtc accagcagat ttgcccgcgc
121 gttctctttc tttccaccca gttgcccttg cggccggctg taaacctgcc actaggaccc
181 ggtcggtgag atctagcctc ttgacctgag agccgagagt ggatcgctgg gctgggctaa
241 cggcgacgga gagcgcgccc tcgctgactc cgggcgcgcc cagcagtagc accgcccgcg
301 cccgcccctg gacacttgta agtttcgatt tccgatttcc gcggaaccga gtcccgcgcc
361 gcggcagagc cagcacagcc agcgcgccat ggcggacccg gaggtgtgct gcttcatcac
421 caaaatcctg tgcgcccacg ggggccgcat ggccctggac gcgctgctcc aggagatcgc
481 gctgtctgag ccgcagctct gtgaggtgct gcaggtggcc gggcccgacc gctttgtggt
541 gttggagacc ggcggcgagg ccgggatcac ccgatcggtg gtggccacca ctcgagcccg
601 ggtctgccgt cgcaagtact gccagagacc ctgcgataac ctgcatctct gcaaactcaa
661 cttgctgggc cggtgcaact attcgcagtc cgagcggaat ttatgcaaat attctcatga
721 ggttctctca gaagagaact tcaaagtcct gaaaaatcac gaactctctg gactgaacaa
781 agaggaatta gcagtgctcc tcctccaaag tgatcctttt tttatgcccg agatatgcaa
841 aagttataag ggagagggtc ggcagcagat ttgtaaccag cagccaccgt gttcaagact
901 ccacatctgt gaccacttca cccgagggaa ctgtcgtttt cccaactgcc tccggtccca
961 taacctgatg gacagaaagg tgctggccat catgagggag cacgggctga accccgacgt
1021 ggtccagaac atccaggaca tctgcaacag caagcacatg cagaagaatc ccccagggcc
1081 cagagctcct tcttcacatc gtagaaacat ggcatatagg gctagaagca agagtagaga
1141 tcggttcttt cagggcagcc aagaatttct tgcgtctgct tcagcgtctg ctgagaggtc
1201 ctgcacacct agtccagatc agatcagcca cagggcttcc ctggaggacg cgcctgtgga
1261 cgatctcacc cgcaagttca cgtatctggg gagtcaggat cgcgctcggc ctccctcagg
1321 ctcgtccaag gctactgatc ttggaggaac aagtcaggcc gggacaagcc agaggttttt
1381 agagaacggc agtcaagagg acctcttgca tggaaatcca ggcagcactt accttgcttc
1441 caattcaaca tcagccccca actggaagag cctcacatcc tggacgaatg accaaggcgc
1501 caggagaaag actgtgtttt ctcccacgct acctgccgcc cgctcttctc ttggctctct
1561 gcaaacacct gaagctgtga ccaccagaaa gggcacaggc ttgctttcct cagactacag
1621 gatcatcaat ggcaaaagtg gaactcagga catccagcct ggccctcttt ttaataataa
1681 tgctgatgga gtggccacag atataacttc taccagatcc ttaaattaca aaagcactag
1741 cagcggtcac agagaaatat catcacctag gattcaggat gctggacctg cttcccgaga
1801 tgtccaggcc actggcagaa tcgcagatga tgctgaccca agagtagcac ttgttaacga
1861 ttctttatct gatgtcacaa gtaccacatc ttctagggtg gatgatcatg actcagagga
1921 aatttgtctt gaccatctgt gtaagggttg tccgcttaat ggtagctgca gcaaagtcca
1981 cttccatctg ccttaccggt ggcagatgct tattggtaaa acctggacgg actttgagca
2041 catggagacg atcgagaaag gctactgtaa ccccggaatc cacctctgtt ctgtaggaag
2101 ttatacaatc aattttcggg taatgagttg tgattccttt cccatccgac gcctctccac
2161 tccttcttct gtcaccaagc cagccaattc tgtcttcacc accaaatgga tttggtattg
2221 gaagaatgaa tctggcacat ggattcagta tggagaagag aaagacaaac ggaaaaattc
2281 aaacgtcgac tcttcatacc tggagtctct ctatcaatcc tgtccgaggg gagttgtgcc
2341 atttcaggcg ggctcacgga actatgagct gagtttccaa gggatgattc agacaaacat
2401 agcttccaaa actcaaaagg atgtcatcag aagaccaaca tttgtgcctc agtggtatgt
2461 gcagcagatg aagagagggc cagagtaagt gttctgaagc agctgtttgc tgacagatgc
2521 ttgagatgtt catgccctgg gctcatcaag tcactcgtga atctggagcc tgttttcctg
2581 aaaagttcct gtttgcatta ctctgcagtt tccatttgca ttatcgatga gtaagatgct
2641 tgttaagcag catggtgtga ctgaaaggat actagatcgg aaaatgaatt ttctttctga
2701 aagggaagtc tgagcgagtc tcctaaatac tctgggcttt agcttctcca gctgtgaaga
2761 gctggattga tgcagtacac ctaaggaata atcatatata ctgggttttt gttttgctgt
2821 ggattctttt tttttttttt tttagagggg gtctcacttt gttgcccagg ctggtcttga
2881 actcctgagc tcaagtgatc ctcctacctc agtctcccaa agtgctggga ttacaggcat
2941 gagccaccgt gcctggcttt gctgtggatt cttttgggtg tcttttgttt tcctacacga
3001 tttatagagg atgaggggcg gagaaagaga tagaaaaaag ggatgagcta gctgttagag
3061 caagggtttt ggtgagagat aatattgatt gaagggattt taaaggaaat gttgctgtgg
3121 gggattcatt gtaactctcc ttgtgaactg ctcagtaaac tctacattgt tcatgaacaa
3181 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaa
//