LOCUS BC039828 3889 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens structural maintenance of chromosomes 6, mRNA (cDNA
clone MGC:48735 IMAGE:5724409), complete cds.
ACCESSION BC039828
VERSION BC039828.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3889)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3889)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (12-NOV-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Invitrogen
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 84 Row: i Column: 19
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 52694676.
FEATURES Location/Qualifiers
source 1..3889
/db_xref="H-InvDB:HIT000052259"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:48735 IMAGE:5724409"
/tissue_type="Ovary, pooled from 3 adults"
/clone_lib="NIH_MGC_125"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..3889
/gene="SMC6"
/gene_synonym="FLJ22116"
/db_xref="GeneID:79677"
/db_xref="HGNC:HGNC:20466"
/db_xref="MIM:609387"
CDS 194..3469
/gene="SMC6"
/gene_synonym="FLJ22116"
/codon_start=1
/product="structural maintenance of chromosomes 6"
/protein_id="AAH39828.1"
/db_xref="GeneID:79677"
/db_xref="HGNC:HGNC:20466"
/db_xref="MIM:609387"
/translation="MAKRKEENFSSPKNAKRPRQEELEDFDKDGDEDECKGTTLTAAE
VGIIESIHLKNFMCHSMLGPFKFGSNVNFVVGNNGSGKSAVLTALIVGLGGRAVATNR
GSSLKGFVKDGQNSADISITLRNRGDDAFKASVYGNSILIQQHISIDGSRSYKLKSAT
GSVVSTRKEELIAILDHFNIQVDNPVSVLTQEMSKQFLQSKNEGDKYKFFMKATQLEQ
MKEDYSYIMETKERTKEQIHQGEERLTELKRQCVEKEERFQSIAGLSTMKTNLESLKH
EMAWAVVNEIEKQLNAIRDNIKIGEDRAARLDRKMEEQQVRLNEAEQKYKDIQDKLEK
ISEETNARAPECMALKADVVAKKRAYNEAEVLYNRSLNEYKALKKDDEQLCKRIEELK
KSTDQSLEPERLERQKKISWLKERVKAFQNQENSVNQEIEQFQQAIEKDKEEHGKIKR
EELDVKHALSYNQRQLKELKDSKTDRLKRFGPNVPALLEAIDDAYRQGHFTYKPVGPL
GACIHLRDPELALAIESCLKGLLQAYCCHNHADERVLQALMKRFYLPGTSRPPIIVSE
FRNEIYDVRHRAAYHPDFPTVLTALEIDNAVVANSLIDMRGIETVLLIKNNSVARAVM
QSQKPPKNCREAFTADGDQVFAGRYYSSENTRPKFLSRDVDSEISDLENEVENKTAQI
LNLQQHLSALEKDIKHNEELLKRCQLHYKELKMKIRKNISEIRELENIEEHQSVDIAT
LEDEAQENKSKMKMVEEHMEQQKENMEHLKSLKIEAENKYDAIKFKINQLSELADPLK
DELNLADSEVDNQKRGKRHYEEKQKEHLDTLNKKKRELDMKEKELEEKMSQARQICPE
RIEVEKSASILDKEINRLRQKIQAEHASHGDREEIMRQYQEARETYLDLDSKVRTLKK
FIKLLGEIMEHRFKTYQQFRRCLTLRCKLYFDNLLSQRAYCGKMNFDHKNETLSISVQ
PGEGNKAAFNDMRALSGGERSFSTVCFILSLWSIAESPFRCLDEFDVYMDMVNRRIAM
DLILKMADSQRFRQFILLTPQSMSSLPSSKLIRILRMSDPERGQTTLPFRPVTQEEDD
DQR"
BASE COUNT 1435 a 640 c 834 g 980 t
ORIGIN
1 cgcggttagt accgcggtgg gcgccggggc tcccgggaat ctaccttctc ctgcggccgg
61 cacgcggttc ccagggggcc agcggcggtc agccgaggtc gagacgcccg cagggtggcc
121 ttagcggccg gtcgtaccac ggcagccccg ccgatcaggt tcctttggga gacttcgact
181 tgttggcgac ctgatggcca aaagaaagga agaaaatttt tcctctccta aaaatgccaa
241 aaggccaaga caagaagaat tggaggattt tgataaagat ggtgacgaag acgaatgtaa
301 aggtactact ttgactgcag cagaagttgg aataattgag agtattcacc taaaaaactt
361 catgtgtcat tcaatgcttg gaccttttaa gtttggttct aatgtcaact ttgttgttgg
421 caacaatgga agtgggaaga gtgcagtact cacagctctc atagtcggtc ttggtggaag
481 agcagttgct actaatagag gatcctcttt aaaaggtttt gtgaaagatg gacagaactc
541 tgcagatatc tcaataacat tgaggaacag aggagatgat gcctttaaag ccagtgtgta
601 tggtaactct atacttatac agcaacacat cagcatagat ggaagtcgat cttataaact
661 taaaagtgca acaggctccg tggtttccac gaggaaagaa gagctgattg caattcttga
721 tcattttaac atccaggtgg ataatccagt ttctgtttta acacaagaaa tgagcaagca
781 gttcttacag tctaaaaatg aaggagacaa atacaaattc ttcatgaaag caacgcaact
841 tgaacagatg aaggaagatt attcatacat tatggaaacg aaagaaagaa caaaggagca
901 gatacatcaa ggagaagagc ggcttactga actaaagcgc cagtgtgtag agaaagagga
961 acgttttcaa agtattgctg gtttaagtac aatgaagact aatttagagt ccttgaaaca
1021 tgaaatggct tgggcagtgg tcaatgaaat tgaaaaacaa ttgaatgcca tcagagataa
1081 tatcaaaatt ggagaagatc gtgctgctag acttgacagg aaaatggaag aacagcaggt
1141 cagacttaat gaggcagaac aaaagtacaa ggatattcaa gacaaactag aaaagattag
1201 tgaagagaca aatgcacgag caccagaatg tatggcattg aaagcagatg ttgttgctaa
1261 gaaaagggcc tataatgaag ctgaggtttt atataaccga tccttaaacg aatataaagc
1321 attaaagaaa gatgatgagc agctttgtaa acgaattgaa gagctgaaaa aaagtactga
1381 ccaatctttg gaacctgaac ggttggaaag acaaaaaaaa atatcttggt taaaagagag
1441 agtaaaggcc tttcaaaatc aagaaaattc agtcaatcaa gagatcgaac agtttcagca
1501 agccatagaa aaggacaaag aagaacatgg caaaattaag agagaagaat tagatgtgaa
1561 gcatgcactg agctacaatc agaggcaact gaaagaattg aaagatagta aaactgatcg
1621 actcaaaaga tttggcccta atgttccagc tcttcttgaa gccatagatg atgcttatag
1681 acaaggacat tttacctata aacctgtagg ccctttagga gcttgcattc atcttcggga
1741 cccagaactt gctttggcta ttgaatcttg cttaaaaggg cttctgcagg cctattgttg
1801 ccataatcat gctgatgaaa gggtccttca ggcactcatg aaaaggtttt atttaccagg
1861 gacctcacgg ccaccgataa tagtttctga gtttcggaat gagatatatg atgtaagaca
1921 cagagctgct tatcatccag actttccaac agttctgaca gctttagaaa tagataatgc
1981 ggttgtggca aatagcctaa ttgacatgag aggcatagag acagtgctac taatcaaaaa
2041 taattctgta gctcgtgcag taatgcagtc ccaaaagcca cccaaaaatt gtagagaagc
2101 ttttactgct gatggtgatc aagtttttgc aggacgttat tattcatctg aaaatacaag
2161 acctaagttc ctaagcagag atgtggattc tgaaataagt gacttggaga atgaggttga
2221 aaataagacg gcccagatat taaatcttca gcaacattta tctgcccttg aaaaagatat
2281 taaacacaat gaggaacttc ttaaaaggtg ccaactacat tataaagaac taaagatgaa
2341 aataagaaaa aatatttctg aaattcggga acttgagaac atagaagaac accagtctgt
2401 agatattgca actttggaag atgaagctca ggaaaataaa agcaaaatga aaatggttga
2461 ggaacatatg gagcaacaaa aagaaaatat ggagcatctt aaaagtctga aaatagaagc
2521 agaaaataag tatgatgcaa ttaaattcaa aattaatcaa ctatcggagc tagcagaccc
2581 acttaaggat gaattaaacc ttgctgattc tgaagtggat aaccaaaaac gagggaaacg
2641 acattatgaa gaaaaacaaa aagaacactt ggatacctta aataaaaaga aacgagaact
2701 ggatatgaaa gagaaagaac tagaggagaa aatgtcacaa gcaagacaaa tctgcccaga
2761 gcgtatagaa gtagaaaaat ctgcatcaat tctggacaaa gaaattaatc gattaaggca
2821 gaagatacag gcagaacatg ctagtcatgg agatcgagag gaaataatga ggcagtacca
2881 agaagcaaga gagacctatc ttgatctgga tagtaaagtg aggactttaa aaaagtttat
2941 taaattactg ggagaaatca tggagcacag attcaagaca tatcaacaat ttagaaggtg
3001 tttgacttta cgatgcaaat tatactttga caacttacta tctcagcggg cctattgtgg
3061 aaaaatgaat tttgaccaca agaatgaaac tctaagtata tcagttcagc ctggagaagg
3121 aaataaagct gctttcaatg acatgagagc cttgtctgga ggtgaacgtt ctttctccac
3181 agtgtgtttt attctttccc tgtggtccat cgcagaatct cctttcagat gcctggatga
3241 atttgatgtc tacatggata tggttaatag gagaattgcc atggacttga tactgaagat
3301 ggcagattcc cagcgtttta gacagtttat cttgctcaca cctcaaagca tgagttcact
3361 tccatccagt aaactgataa gaattctccg aatgtctgat cctgaaagag gacaaactac
3421 attgcctttc agacctgtga ctcaagaaga agatgatgac caaaggtgat ttgtaactta
3481 acatgccttg tcctgatgtt gaaggatttg tgaagggaaa aaaaattctg gactctttga
3541 tataataaaa tgagactgga ggcattctga aatgaaagaa actcctttat atatccaacc
3601 acaatcaaac atataaataa gcctggaaaa ccaactacaa cctgcaattt aagattacta
3661 ttactttaag aaaatcaatt tcatagtatt ggttttaaat ctttttaagt ttttttaata
3721 cgatctattt ttataggttc tttttcagaa gtaaaatttt gtacatatat acatgtacat
3781 atctgtttag tttgggttca tttctataac attttgtaag aaaataaaag tttgagcacc
3841 tgaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaa
//