LOCUS BC036123 3219 bp mRNA linear HUM 18-MAR-2009
DEFINITION Homo sapiens small ArfGAP 1, mRNA (cDNA clone MGC:33992
IMAGE:5313112), complete cds.
ACCESSION BC036123
VERSION BC036123.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3219)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3219)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-JUL-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 48 Row: p Column: 11
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis, GenomeScan gene prediction.
FEATURES Location/Qualifiers
source 1..3219
/db_xref="H-InvDB:HIT000051637"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:33992 IMAGE:5313112"
/tissue_type="Brain, hypothalamus"
/clone_lib="NIH_MGC_96"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3219
/gene="SMAP1"
/gene_synonym="SMAP-1"
/db_xref="GeneID:60682"
/db_xref="HGNC:HGNC:19651"
/db_xref="MIM:611372"
CDS 107..1510
/gene="SMAP1"
/gene_synonym="SMAP-1"
/codon_start=1
/product="small ArfGAP 1"
/protein_id="AAH36123.1"
/db_xref="GeneID:60682"
/db_xref="HGNC:HGNC:19651"
/db_xref="MIM:611372"
/translation="MATRSCREKAQKLNEQHQLILSKLLREEDNKYCADCEAKGPRWA
SWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTAEQIQCMQDMGNTKARLLYEANL
PENFRRPQTDQAVEFFIRDKYEKKKYYDKNAIAITNISSSDAPLQPLVSSPSLQAAVD
KNKLEKEKEKKKEEKKREKEPEKPAKPLTAEKLQKKDQQLEPKKSTSPKKAAEPTVDL
LGLDGPAVAPVTNGNTTVPPLNDDLDIFGPMISNPLPATVMPPAQGTPSAPAAATLST
VTSGDLDLFTEQTTKSEEVAKKQLSKDSILSLYGTGTIQQQSTPGVFMGPTNIPFTSQ
APAAFQGFPSMGVPVPAAPGLIGNVMGQSPSMMVGMPMPNGFMGNAQTGVMPLPQNVV
GHQGGMVGQMGAPQSKFGLPQAQQPQWSLSQMNQQMAGMSISSATPTAGFGQPSSTTA
GWSGSSSGQTLSTQLWK"
BASE COUNT 995 a 713 c 658 g 853 t
ORIGIN
1 gagtccgccc gcggtcccgg cggcgccagg tgcgttcact ctgcccggct ccagccagcg
61 tccgccgccg ccgtagctgc cccaggctcc ccgccccgct gccgagatgg cgacgcgctc
121 ctgtcgggag aaggctcaga agctgaacga gcagcaccag ctcatcctat ccaagcttct
181 gagggaggag gacaacaagt actgcgccga ctgcgaggcc aaaggtcctc gatgggcttc
241 ctggaatatt ggtgtgttta tttgcatcag atgtgctgga attcatagaa atcttggggt
301 tcatatatcc agggtcaaat cagtcaacct agaccaatgg acagcagaac agatacagtg
361 catgcaagat atgggaaata ctaaagcaag actactctat gaagccaatc ttccagagaa
421 ctttcgaaga ccacagacag atcaagcagt ggaatttttc atcagagata aatatgaaaa
481 gaagaaatac tacgataaaa atgccatagc tattacaaat atttcctcct ctgatgctcc
541 tcttcagcct ttggtatcct ctccttctct gcaagctgct gttgacaaaa ataaattgga
601 gaaagaaaag gaaaaaaaaa aggaagagaa aaagagagaa aaggagccag aaaagccggc
661 aaaaccactt acagctgaaa agctgcagaa gaaagatcag caactggagc ctaaaaaaag
721 taccagccct aaaaaagctg cggagcccac tgtggatctt ttaggacttg atggccctgc
781 tgtggcacca gtgaccaacg ggaacacaac ggtgccaccc ctgaacgatg atctggacat
841 ctttggaccg atgatttcta atcccttacc tgcaactgtc atgcccccag ctcaggggac
901 accctctgca ccagcagctg caaccctgtc tacagtaaca tctggggatc tagatttatt
961 cactgagcaa actacaaaat cagaagaagt ggcaaagaaa caactttcca aagactccat
1021 cttatctctg tatggcacag gaaccattca acagcaaagt actcctggtg tatttatggg
1081 acccacaaat ataccattta cctcacaagc accagctgca tttcagggct ttccatcgat
1141 gggcgtgcct gtgcctgcag ctcctggcct tataggaaat gtgatgggac agagtccaag
1201 catgatggtg ggcatgccca tgcccaatgg gtttatggga aatgcacaaa ctggtgtgat
1261 gccacttcct cagaacgttg ttggccacca aggaggaatg gtgggacaaa tgggtgcacc
1321 ccagagtaag tttggcctgc cgcaagctca gcagccccag tggagcctct cacagatgaa
1381 tcagcagatg gctggcatga gtatcagtag tgcaacccct actgcaggtt ttggccagcc
1441 ctccagcaca acagcaggat ggtctggaag ctcatcaggt cagactctca gcacacaact
1501 gtggaaatga aaactgcaat acaagtttca tccagaacta ccacctgaca ttccttgctg
1561 aaacgcatct agttcccctg tttattcata tgcatacttt ttttcttttt acccatttgt
1621 tcatattaag aatgatctga ttgaccgtgt tggtctgtac tgattcaatt tgatgtggtg
1681 aaaagcaggt tgataaatca ttttatgtca agggcagctt tgctcatatt tcccatgatt
1741 tcatgtactg cattatttga gaagctgctc aacttgcaaa atcagttttc ctctcaataa
1801 aattatagct ctaatgtttg cttataaggg aagtagttat catgttagta atacctctaa
1861 tagtataaac cccaccccaa aattagccag taatcctgta ggaaggtact gtatgatcaa
1921 atgtttaatc atataaatag aatgtaaatg tctcactgag cactgttttc tagtgtatca
1981 aaatgctctt atttcatcat tcacttcact gtgctgttgt tatgatgtgc ttaacaggga
2041 acgtgattag tgaaaggaag ataaacgtgg atgttactcc aaaacttcgt ttaatgaatg
2101 cttaaagaat tcagatttta tctgcctctc ttgtaatttg gatctcttct taatgtacat
2161 agtgctaaca tgaagacctt tttctgcact atatgcaaac agggtaacta actaaaacaa
2221 agccactttc aatcttcaat ccttgaaggt atatctaggt ttatgacagt aattgtgttt
2281 acattttatg gtgcctagta ttgacaaaat gttatttcac tacattaaac atgactccat
2341 agaccttttc atttgtgggt ttttatttcc tatgatgtat actgccacta accttccaaa
2401 aattacttag tattgcaaag tcaggaatca tcaggaacgt ttagctgaca aaatacttgt
2461 ctgttttaaa aacctgttca agtctaccaa cctgttcaag tctaccaatt ataagggcaa
2521 attggagaaa aagaaaaaat atatactcaa gagtggtatc ttgcagtatc ggcactgtac
2581 aaaaaaatct tccaatttag ttgttgtaga gaaaacatgc agaacaaatg aagacaaaac
2641 atacattttg taccaaccat ccaattagct tatgttaact gacaagctcc atttaaacag
2701 atgtccatca gatgacaaga aaggctgctg tactgaagta aaacaaacaa tacctgaatg
2761 ctctgtagcc taaactccaa acatcctctt ccatatggat ccactggctg gacaaactgc
2821 accagttgct gcttcaattt atacctcaat tttcactgtg tccaggtggt actttggctc
2881 gttggctaga ttaaccttct ctgtccgagt gtgccacacg agaacctgaa ggggaaggaa
2941 atagcttggg tagcgcactc ttcatggtga cactcgaggt cgggcagcac aagtgtaatg
3001 aataccttag tgcagttatt tgctttcggt tccagttctt cgactgttgt tatctgtttg
3061 agaaagtcag attcttgcat ccctggctgg gatccacgac gcttaaatac agcttttgga
3121 ttggacaaaa tgacttgaag acttacagca aatcctttgt gaaaaataaa aaaaaaaaag
3181 agactttaaa aaaaaaaaaa aacaaaaaaa aaaaaaaaa
//