LOCUS BC035577 4966 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens intraflagellar transport 140 homolog (Chlamydomonas),
mRNA (cDNA clone MGC:45123 IMAGE:5552740), complete cds.
ACCESSION BC035577
VERSION BC035577.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4966)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4966)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-JUL-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Lou Staudt
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 69 Row: l Column: 5
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 41281446.
FEATURES Location/Qualifiers
source 1..4966
/db_xref="H-InvDB:HIT000051420"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:45123 IMAGE:5552740"
/tissue_type="Lymph, lymphoma"
/clone_lib="NIH_MGC_85"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..4966
/gene="IFT140"
/gene_synonym="c305C8.4"
/gene_synonym="c380F5.1"
/gene_synonym="gs114"
/gene_synonym="KIAA0590"
/db_xref="GeneID:9742"
/db_xref="HGNC:HGNC:29077"
CDS 48..4436
/gene="IFT140"
/gene_synonym="c305C8.4"
/gene_synonym="c380F5.1"
/gene_synonym="gs114"
/gene_synonym="KIAA0590"
/codon_start=1
/product="intraflagellar transport 140 homolog
(Chlamydomonas)"
/protein_id="AAH35577.1"
/db_xref="GeneID:9742"
/db_xref="HGNC:HGNC:29077"
/translation="MALYYDHQIEAPDAAGSPSFISWHPVHPFLAVAYISTTSTGSVD
IYLEQGECVPDTHVERPFRVASLCWHPTRLVLAVGWETGEVTVFNKQDKEQHTMPLTH
TADITVLRWSPSGNCLLSGDRLGVLLLWRLDQRGRVQGTPLLKHEYGKHLTHCIFRLP
PPGEDLVQLAKAAVSGDEKALDMFNWKKSSSGSLLKMGSHEGLLFFVSLMDGTVHYVD
EKGKTTQVVSADSTIQMLFYMEKREALVVVTENLRLSLYTVPPEGKAEEVMKVKLSGK
TGRRADIALIEGSLLVMAVGEAALRFWDIERGENYILSPDEKFGFEKGENMNCVCYCK
VKGLLAAGTDRGRVAMWRKVPDFLGSPGAEGKDRWALQTPTELQGNITQIQWGSRKNL
LAVNSVISVAILSERAMSSHFHQQVAAMQVSPSLLNVCFLSTGVAHSLRTDMHISGVF
ATKDAVAVWNGRQVAIFELSGAAIRSAGTFLCETPVLAMHEENVYTVESNRVQVRTWQ
GTVKQLLLFSETEGNPCFLDICGNFLVVGTDLAHFKSFDLSRREAKAHCSCRSLAELV
PGVGGIASLRCSSSGSTISILPSKADNSPDSKICFYDVEMDTVTVFDFKTGQIDRRET
LSFNEQETNKSHLFVDEGLKNYVPVNHFWDQSEPRLFVCEAVQETPRSQPQSANGQPQ
DGRAGPAADVLILSFFISEEHGFLLHESFPRPATSHSLLGMEVPYYYFTRKPEEADRE
DEVEPGCHHIPQMVSRRPLRDFVGLEDCDKATRDAMLHFSFFVTIGDMDEAFKSIKLI
KSEAVWENMARMCVKTQRLDVAKVCLGNMGHARGARALREAEQEPELEARVAVLATQL
GMLEDAEQLYRKCKRHDLLNKFYQAAGRWQEALQVAEHHDRVHLRSTYHRYAGHLEAS
ADCSRALSYYEKSDTHRFEVPRMLSEDLPSLELYVNKMKDKTLWRWWAQYLESQGEMD
AALHYYELARDHFSLVRIHCFQGNVQKAAQIANETGNLAASYHLARQYESQEEVGQAV
HFYTRAQAFKNAIRLCKENGLDDQLMNLALLSSPEDMIEAARYYEEKGVQMDRAVMLY
HKAGHFSKALELAFATQQFVALQLIAEDLDETSDPALLARCSDFFIEHSQYERAVELL
LAARKYQEALQLCLGQNMSITEEMAEKMTVAKDSSDLPEESRRELLEQIADCCMRQGS
YHLATKKYTQAGNKLKAMRALLKSGDTEKITFFASVSRQKEIYIMAANYLQSLDWRKE
PEIMKNIIGFYTKGRALDLLAGFYDACAQVEIDEYQNYDKAHGALTEAYKCLAKAKAK
SPLDQETRLAQLQSRMALVKRFIQARRTYTEDPKESIKQCELLLEEPDLDSTIRIGDV
YGFLVEHYVRKEEYQTAYRFLEEMRRRLPLANMSYYVSPQAVDAVHRGLGLPLPRTVP
EQVRHNSMEDARELDEEVVEEADDDP"
BASE COUNT 1117 a 1406 c 1531 g 912 t
ORIGIN
1 ccacgcgtcc gcagaggttt cagcgctgag gaggcctgag ttccgtcatg gccctctatt
61 atgaccacca gatagaagcc ccggatgcag cagggtcacc ctcatttatc agctggcacc
121 ctgtccatcc attcttggca gttgcttaca tcagcacaac ctcaacaggc agcgtggata
181 tttacctgga gcaaggggag tgcgtgccag atacacacgt cgagaggccg ttccgggttg
241 cttccctgtg ctggcacccg acgcggctgg tgctggctgt gggctgggag actggagaag
301 tgacggtgtt taacaagcag gacaaggagc agcacacgat gcccctgaca cacacagccg
361 acatcaccgt gctccgttgg agccccagtg gaaactgcct gctgtctggg gacaggcttg
421 gtgtcttgct cttgtggagg ttggaccaaa ggggccgagt gcaagggacg cctctgctga
481 aacacgagta tgggaaacac ctcacgcact gcatcttccg gctcccccct cctggcgagg
541 acctggttca gttggcaaag gcagctgtga gcggtgatga gaaagccctg gacatgttta
601 actggaagaa gagcagttct ggaagtttgc tgaagatggg gtctcacgag gggctgttgt
661 tctttgtcag tctgatggac gggacagtgc actatgtgga tgagaagggc aagaccactc
721 aggtggtgtc cgcagacagc acgattcaga tgctgttcta catggagaag agggaggcac
781 tggtggtggt cacagagaac ctccggctgt ccctgtacac ggtgcctcct gagggcaaag
841 cagaagaagt gatgaaggtc aagctgagcg ggaaaaccgg ccgccgggca gacatcgctt
901 tgattgaagg cagccttctc gtgatggccg tcggggaggc tgccctcaga ttctgggaca
961 tagaacgagg agagaattat atactgagtc cagatgagaa gtttggcttt gagaaaggag
1021 agaatatgaa ctgtgtgtgt tactgtaaag tcaaaggtct tctggccgct ggtaccgaca
1081 gagggcgagt agccatgtgg aggaaagtac cagacttcct gggcagcccc ggggcagagg
1141 gcaaggacag gtgggccctt cagaccccta ccgagctcca aggaaacatc acgcaaatcc
1201 agtggggttc caggaagaac ctgctggcag tgaacagcgt catctccgtg gccatcctca
1261 gcgagcgggc catgtcgtca cacttccacc agcaagtggc cgccatgcag gtctccccga
1321 gtctgctgaa tgtgtgcttc ctgtccacgg gggtcgcaca cagcctgcgc accgacatgc
1381 acatcagtgg agtgtttgcc accaaggatg ctgtcgcagt ctggaacgga aggcaggtgg
1441 cgatcttcga gctttctgga gccgcgatac ggagtgcagg gaccttcttg tgtgagacgc
1501 ctgtgttagc aatgcatgaa gaaaacgttt acacggtgga gtcaaaccga gttcaagttc
1561 gaacctggca ggggactgtc aaacaactcc tccttttctc ggagactgag gggaatccct
1621 gcttcttgga catctgtggg aatttcctgg ttgtagggac agacttggct cactttaaaa
1681 gctttgatct ttcccgaaga gaggccaaag cacactgtag ctgcaggagc ctggcggagc
1741 tggtccctgg ggtggggggc atcgcttctc tgcggtgcag cagcagcggg agcaccatca
1801 gcatcctccc cagcaaggct gacaacagcc ctgattccaa aatctgcttc tacgatgttg
1861 aaatggacac agtgaccgtc tttgacttca agactggaca aattgatcgg agagagacgc
1921 tgtcctttaa tgagcaagag actaataaga gccacctctt tgtggatgag ggactgaaaa
1981 attatgttcc cgtgaaccac ttctgggacc agagtgagcc ccggctgttt gtatgcgaag
2041 ccgtgcagga gacgccgcgc tcccagcctc agtctgcaaa cgggcagccc caagatgggc
2101 gcgctggccc tgcggcagat gttttgatcc tgtccttctt catttccgaa gagcacggct
2161 tcctgcttca tgagagcttc ccccggcctg ccacctccca cagtctcctg gggatggaag
2221 tgccttatta ctacttcaca agaaagcccg aagaagcaga cagagaagac gaggtggagc
2281 ctgggtgcca ccacatccct cagatggtgt ccaggagacc cctgcgagac tttgtggggc
2341 tggaggactg cgacaaggcc acccgggacg ccatgctcca cttcagcttc tttgtcacca
2401 taggagacat ggacgaagcc ttcaaatcca tcaagctcat caaaagtgag gccgtctggg
2461 agaacatggc gcgcatgtgc gtgaagaccc agcggctgga cgtggccaag gtgtgcctgg
2521 ggaacatggg ccatgcccgc ggggcccgag cgctgcgtga ggcggagcag gagccggagc
2581 tagaggcccg cgtggccgtg ctggccacgc agctgggcat gctggaggac gccgagcagc
2641 tgtacaggaa gtgcaagcgc cacgacctcc tgaacaagtt ctaccaggct gcgggccggt
2701 ggcaggaggc cctccaggta gccgagcacc acgatcgcgt gcacctgcgc agcacctacc
2761 accgctatgc cgggcacctg gaggccagcg ccgactgcag ccgggccctc agttactacg
2821 agaagtcgga cacgcaccgc ttcgaggtgc ccaggatgct gtcggaggac ctgccgtccc
2881 tggagctcta cgtgaataaa atgaaggata agaccctgtg gcggtggtgg gcgcagtacc
2941 tggagagcca gggcgagatg gacgccgcgc tgcactacta cgagctggcc cgggaccact
3001 tctccctggt ccgcatccac tgcttccagg gcaatgtcca gaaggctgcg caaatagcca
3061 acgagacagg aaacctggcg gcctcctacc acctcgcccg ccagtacgag agccaggagg
3121 aggtcgggca ggcggtgcac ttctacaccc gggcacaggc cttcaagaat gccatccgcc
3181 tgtgcaagga gaacggcctg gacgaccagc tcatgaactt ggccctgctg agctcccccg
3241 aggacatgat cgaggcggcc cgatactacg aggagaaggg cgtgcagatg gacagggcgg
3301 tcatgctgta ccacaaggct ggccacttct ccaaggccct ggagctggcc tttgccaccc
3361 agcagtttgt ggccctacag ctcatagcag aggacctgga tgagacgtca gaccctgcgc
3421 tcctggcccg ctgctccgac ttcttcatcg agcacagtca gtacgagagg gcggtagagc
3481 tgctgctggc tgccaggaag tatcaggaag ccctgcagct gtgcctgggg cagaacatga
3541 gcatcaccga ggagatggcg gaaaagatga ccgtggccaa ggactcctcg gacctgcctg
3601 aggagtcgcg gcgggagctg ctggagcaga tagcagactg ctgcatgcgc cagggcagct
3661 accacctggc caccaagaag tacacgcagg ccggcaacaa gctgaaggcc atgagggcgc
3721 tgctcaaatc cggagacacg gagaaaatca cgttcttcgc gagcgtgtcc aggcagaagg
3781 aaatctacat catggctgct aactacctgc agtccctgga ctggcggaag gagccggaga
3841 tcatgaagaa catcatcggc ttctacacca aggggcgggc cctggacctc ctggctggct
3901 tttatgacgc ttgtgcccag gtggagattg atgaatacca gaactacgac aaagcccacg
3961 gggcgctgac cgaggcctac aagtgcctgg ccaaggccaa ggccaagagc cccctggacc
4021 aggagaccag gctggcgcag ctgcagagca ggatggcact ggtgaagagg ttcatccagg
4081 cccgcaggac gtacacagag gaccccaagg agtccatcaa gcagtgtgag ctgctcctgg
4141 aggaaccaga cctggacagc accatccgca tcggggacgt ctatggcttc ctggtggagc
4201 actacgtgcg gaaggaggaa taccagacgg cctacagatt cctggaggag atgcggcggc
4261 ggcttccctt ggccaacatg tcctactacg tgagcccgca ggccgtggac gccgtgcacc
4321 gggggctggg tctcccactg ccacgcaccg tccccgagca ggtccgccac aacagcatgg
4381 aggacgccag ggagctggac gaggaggtgg tggaagaggc agatgacgac ccctgagggg
4441 cctgggcccc aggaccagcg tgctgctgca gaaaggcatc ttctggaatt tttttgtcag
4501 ctgtggcaaa gccagcattt ttgctgggaa aaaacatgtc tgtgttggaa tacgcgacag
4561 agctgggcga gaacgcagcg gcccgggccg gcggagggtg tgacccgtct gcaccttgct
4621 ctgtcccacc tgcctctggg tgcccggcag ctccactaga tttttggatt cattcctttg
4681 aagggagtcg ggttcaccct tccatcgtat tctcccaact acacattgta aagcctgaga
4741 aacttctaga acctcaggaa gctgcagctg gagggctggg gcacctgccc ccctgctccc
4801 cacacatcat atcctcccca tactcctgca gggcccacgg ctcctgagca acagctggga
4861 cacccgggcc ttggcggctg caccccctgc taggctctgc ccaccggcca ccaacactcc
4921 tgtaattcca ataaagcagt ttattttctg aaaaaaaaaa aaaaaa
//