LOCUS BC035029 4696 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens solute carrier family 9 (sodium/hydrogen exchanger),
member 6, mRNA (cDNA clone MGC:33775 IMAGE:5264865), complete cds.
ACCESSION BC035029
VERSION BC035029.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4696)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4696)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-JUL-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 47 Row: i Column: 12.
FEATURES Location/Qualifiers
source 1..4696
/db_xref="H-InvDB:HIT000093645"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:33775 IMAGE:5264865"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..4696
/gene="SLC9A6"
/gene_synonym="KIAA0267"
/gene_synonym="NHE6"
/db_xref="GeneID:10479"
/db_xref="HGNC:HGNC:11079"
/db_xref="MIM:300231"
CDS 39..2144
/gene="SLC9A6"
/gene_synonym="KIAA0267"
/gene_synonym="NHE6"
/codon_start=1
/product="solute carrier family 9 (sodium/hydrogen
exchanger), member 6"
/protein_id="AAH35029.1"
/db_xref="GeneID:10479"
/db_xref="HGNC:HGNC:11079"
/db_xref="MIM:300231"
/translation="MARRGWRRAPLRRGVGSSPGARRLMRPLWLLLAVGVFDWAGASD
GGGGEARAMDEEIVSEKQAEESHRQDSANLLIFILLLTLTILTIWLFKHRRARFLHET
GLAMIYGLLVGLVLRYGIHVPSDVNNVTLSCEVQSSPTTLLVNVSGKFYEYMLKGEIS
SHELNNVQDNEMLRKVTFDPEVFFNILLPPIIFYAGYSLKRRHFFRNLGSILAYAFLG
TAISCFVIGSIMYGCVTLMKVTGQLAGDFYFTDCLLFGAIVSATDPVTVLAIFHELQV
DVELYALLFGESVLNDAVAIVLSSSIVAYQPAGDNSHTFDVTAMFKSIGIFLGIFSGS
FAMGAATGVVTALVTKFTKLREFQLLETGLFFLMSWSTFLLAEAWGFTGVVAVLFCGI
TQAHYTYNNLSTESQHRTKQLFELLNFLAENFIFSYMGLTLFTFQNHVFNPTFVVGAF
VAIFLGRAANIYPLSLLLNLGRRSKIGSNFQHMMMFAGLRGAMAFALAIRDTATYARQ
MMFSTTLLIVFFTVWVFGGGTTAMLSCLHIRVGVDSDQEHLGVPENERRTTKAESAWL
FRMWYNFDHNYLKPLLTHSGPPLTTTLPACCGPIARCLTSPQAYENQEQLKDDDSDLI
LNDGDISLTYGDSTVNTEPATSSAPRRFMGNSSEDALDRELAFGDHELVIRGTRLVLP
MDDSEPPLNLLDNTRHGPA"
BASE COUNT 1217 a 926 c 1056 g 1497 t
ORIGIN
1 agcggcgggt gaggtagggg cgggaggcgg ggggagacat ggctcggcgc ggctggcggc
61 gggcacccct ccgccgtggc gtcggcagca gtcccggagc ccgcaggctc atgcggcccc
121 tttggttgct cctcgcagtg ggcgtctttg actgggcagg ggcttcggac ggcggcggcg
181 gagaggctag agccatggac gaggagatcg tgtccgagaa gcaagccgag gagagccacc
241 ggcaggacag cgccaacctg ctcatcttca tcctgctgct caccctcacc attctcacaa
301 tctggctctt caagcaccgc cgggcccgct tcctgcacga aaccggcctg gctatgattt
361 atggtctttt ggtgggcctt gtgcttcggt atggcattca tgttccgagt gatgtaaata
421 atgtgaccct gagctgtgaa gtgcagtcaa gtccaactac cttactggta aatgttagtg
481 gaaaatttta tgagtatatg ctgaaaggag agattagttc acatgaactc aataatgttc
541 aagataatga aatgcttaga aaggttactt ttgatccaga agtatttttc aacatattac
601 ttcctcctat catattttat gcaggttata gcctgaaaag gagacatttt tttcgaaatc
661 ttgggtctat cctagcatac gcttttcttg gaacagcaat ttcttgtttc gttattgggt
721 caataatgta tggctgtgta acgctgatga aggtaacggg acaacttgca ggagattttt
781 actttacaga ttgcctactg tttggtgcca ttgtatcagc aactgatcca gtgactgttc
841 ttgctatatt ccacgagctt caagttgatg ttgaactcta tgcacttctt tttggtgaaa
901 gtgtcctcaa tgatgctgtt gccatagtgc tgtcctcctc aatagtggca taccagccag
961 ctggagacaa cagtcacacc tttgatgtca cagcgatgtt caagtctatt gggatcttcc
1021 ttggaatctt cagtggatct tttgcaatgg gtgctgctac tggagtggtg acagctttag
1081 tgacaaagtt caccaaatta cgggagttcc agttgttgga gacaggcctg ttcttcttga
1141 tgtcctggag taccttcctc ttggctgaag catggggctt cacaggtgta gttgcagtat
1201 tgttttgtgg catcacacaa gcacattata cgtataataa tttgtccacg gagtctcagc
1261 atagaactaa acagttgttt gagcttctca atttcttggc agagaatttc atcttctcct
1321 acatggggct gacactgttc accttccaga accatgtctt taacccaaca tttgtagtag
1381 gagcatttgt tgctattttc ttgggaagag ctgccaatat ttaccccttg tccctcttac
1441 ttaatttggg tagaagaagt aagattggat caaattttca acacatgatg atgtttgctg
1501 gccttcgtgg tgcaatggca tttgccttgg ccattcgaga tactgccact tatgcacggc
1561 aaatgatgtt cagcaccacg cttctgattg tgttttttac ggtgtgggta tttggtggtg
1621 gcaccactgc aatgctgtca tgcttgcata tcagggttgg tgttgattca gaccaagaac
1681 acttgggtgt tcctgaaaat gaaaggagaa ctaccaaagc agagagtgct tggcttttcc
1741 ggatgtggta caactttgat cataactatc tgaagcctct gctgacccac agcgggcctc
1801 cgctgacaac aacactccct gcctgctgtg gacccatcgc caggtgcctc accagccccc
1861 aggcttacga aaaccaggaa cagttgaaag atgatgattc tgatcttatt ctcaatgatg
1921 gtgacatcag tttgacatat ggagattcta ctgtgaacac tgaaccggcc acatccagcg
1981 ccccaaggag atttatggga aacagttctg aagatgcctt ggatcgggag cttgcatttg
2041 gggaccatga actggtcatt cgaggaacac gcctggttct tccaatggat gattctgaac
2101 ccccgctaaa tttgttagat aatacgagac atggtccagc ctaagcttac taatactcac
2161 ttagtgattt gtaaaatttg cacatgtgat tgtgaagaaa tttgtactac ctaaaagtcc
2221 cagtgcatgt ctctgaatgt gtaagctata taaatgctat ttatatggca tagaaagaat
2281 ataaatatcc tgtacacggc agattgtgaa caaactatat tcctttaagt tttcctggtt
2341 gcactctgta gactggatct gttttaggaa gttactttca cagtgatgtt gtgtgttctg
2401 ttagttttat gtctcagtta aagtgtaaaa agtgacggat tttctctttc ttaaacttac
2461 ctgacactta accagagtac cagttctcgt gatgtgaatt aatttttttg tgtgctaggg
2521 gagggagagt gaggagggag tgttatttcc ttgggaacct agggaggaga ggttcctttg
2581 ttgggaaact tttgttgata gctgctgcct ttgtcctgat cgttttcttt cccttttctc
2641 tggtggcctg ttgtggtgca acgagctgat ggcatttgat cttgccccat tcaggttggg
2701 gagtgaagtg tgaggaccct tttcccccgc ttgctgtgaa agcacagatt cattgactac
2761 agtacactgt tgttcagaaa agaaggctgc aaatgacttc tgagacttta tgtcttttct
2821 tccagaccaa gaccgtagaa ggagtcacat ctagccggct tagccaaagt acaggtgtat
2881 atagttcagg gcacttgatt tagatttgga ggggctgggg tgggcagaga gcaagaggcg
2941 agtaaagaga atggtggttt cagagatctc tcttcccaaa tgtgtaaata ttgtatacca
3001 gataagttta aataagaaat ttaattgctg cttaattttt gattatgtac tttatctgta
3061 tagcaggctt tgtcgtcaga agtttttata tcgatttaaa ttgctgctct ttagcagcca
3121 aacaggagca aaatgtaaaa tttttgaact tactgtgtct aatcatcatt tgttagtctg
3181 tagttaatgt caacagttaa tttatgaacc cacgatcgtt ccacactgca ccaaagtcag
3241 tcataagaga aatcgaatat tctggagcac tgattgcagc agggtggctc ctttgtgtgc
3301 agcaggtgta gtagtcttca ttttcatggt acgttttaat attaattacc taagctgcca
3361 tgcatttttt tttttacagt tctcaaggaa gagcacagaa caatttctca tttcatattt
3421 ggagtatgaa agtagattct attttgtaat gctgataata cctaaagatg cattgaatgc
3481 ttggaagaat gctttttgat gttgattttg acctgttcat gattcagaag aaaaacaaac
3541 ttttttggat tttttttccc tcaggtctga gtagcattgc cttaaatctt atccagttag
3601 aacattgatt tatttacatg atgttcagat tttccagtga aaaataccct tctgaacaaa
3661 acatgtactt actctccgaa aggcatctat ctgtgctatt gcaaacactc cttgagattt
3721 taggggaatt ctaatgttgt accctttcgt ggcagctttg actgttggca tagccatttg
3781 ttatgtagtg gtagcgactt tcctgctatg caggaatccc tcccatgacg tgtatgtttt
3841 acatgatgtg tgcctcttca cgcagtaaat agtttcttgt taatgtatgt ttgaggagtt
3901 tgaacgtcag tgtcacttac ccacaaagtt attcaagttg taaaaggtta tacaataatt
3961 taacaactac cttttttatt ctgtcgggtt actgacctca ctttatgtaa atacttcgca
4021 tgacaaattc agtaactcgt ctatttcagc atgcataaga cttttcacta gggaaactga
4081 taaagcttga gtcaactaaa tctgccttca tactttatca aggggaacca agcctgctgt
4141 gcttacatca gcatctggaa gactttcctc tcctctaatc tgtgtacaca tctccaagca
4201 aggaagaaaa aacaaactct gctcagacgc ctatgaaaca cctgaatgaa ctttgatgaa
4261 gtacagtctg agttaccatc atgcacaagt agaactgctc ttggacttgt tttcctgttg
4321 tttgtggaac ctacgcgttt gaatggcttg aacgttgcat cttttaaagt tattttttaa
4381 ggtttcttgg catttatcct agttgtccgt gtttggcaat gtgctgttaa agtaatagac
4441 ttttaatctt tatgtatttt ttgttttctc tggagtactt ggacagatgt tatagtggtt
4501 tcttttagga aaatctgtca ttaaaaaagt tatagccttg caaataacca ctcacagtat
4561 ttgagtcaca gtttatttta gtgagacgta aagagtgctg acttcattta tttttctacc
4621 tatataccta gtggaaaagg ggaagactaa tgttttcaaa taaacaaaca gaaacctaac
4681 aaaaaaaaaa aaaaaa
//