LOCUS BC033795 2211 bp mRNA linear HUM 06-MAR-2007
DEFINITION Homo sapiens tetratricopeptide repeat domain 30B, mRNA (cDNA clone
MGC:45475 IMAGE:5175299), complete cds.
ACCESSION BC033795
VERSION BC033795.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2211)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2211)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-JUL-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 68 Row: j Column: 1
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 22749072.
FEATURES Location/Qualifiers
source 1..2211
/db_xref="H-InvDB:HIT000041960"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:45475 IMAGE:5175299"
/tissue_type="Brain, Lung, Testis, adult, pooled whole"
/clone_lib="NIH_MGC_115"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2211
/gene="TTC30B"
/db_xref="GeneID:150737"
/db_xref="HGNC:HGNC:26425"
CDS 18..2015
/gene="TTC30B"
/codon_start=1
/product="tetratricopeptide repeat domain 30B"
/protein_id="AAH33795.1"
/db_xref="GeneID:150737"
/db_xref="HGNC:HGNC:26425"
/translation="MAGLSGAQIPDGEFTAVVYRLIRNARYAEAVQLLGGELQRSPRS
RAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQALYKACLYAEATRVA
FLLLDNPAYHSRVLHLQAAIKYSEGDLPGSRSLVEQLPSREGGEESGGENETDGQINL
GCLLYKEGQYEAACSKFFAALQASGYQPDLSYNLALAYYSSRQYASALKHIAEIIERG
IRQHPELGVGMTTEGIDVRSVGNTLVLHQTALVEAFNLKAAIEYQLRNYEAAQEALTD
MPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQNPFPPETFGNLLLLYCKYE
YFDLAADVLAENAHLIYKFLTPYLYDFLDAVITCQTAPEEAFIKLDGLAGMLTEVLRK
LTIQVQEARHNRDDEAIKKAVNEYDETMEKYIPVLMAQAKIYWNLENYPMVEKIFRKS
VEFCNDHDVWKLNVAHVLFMQENKYKEAIGFYEPIVKKHYDNILNVSAIVLANLCVSY
IMTSQNEEAEELMRKIEKEEEQLSYDDPDKKMYHLCIVNLVIGTLYCAKGNYDFGISR
VIKSLEPYNKKLGTDTWYYAKRCFLSLLENMSKHTIMLRDSVIQECVQFLEHCELHGR
NIPAVIEQPLEEERMHVGKNTVTYESRQLKALIYEIIGWNI"
BASE COUNT 655 a 488 c 537 g 531 t
ORIGIN
1 taacagccgt ggtggttatg gctggcctga gcggcgcgca gatccccgac ggggagttca
61 ccgcggtcgt gtaccgcctc atccgcaatg cacgctacgc cgaggcggtg cagctgctgg
121 gcggagaact gcagcggagc cctaggagcc gcgccggcct gtcgctgcta ggctactgct
181 actaccgcct gcaggagttc gcgctggcgg ccgagtgcta tgagcagctg ggccagctgc
241 acccggaact ggagcagtac cgcctgtacc aggcccaggc cctatacaag gcctgccttt
301 atgcggaggc cacccgggtc gccttccttc tcctggataa ccccgcctac cacagccggg
361 tcctccacct gcaagctgct atcaagtaca gcgagggcga tctgccaggg tccaggagcc
421 tggtagagca gctgccgagt agggaagggg gagaggaaag tgggggcgag aatgagaccg
481 atggccagat caacctgggt tgtttgctct acaaggaggg acagtatgaa gctgcatgct
541 ccaagttttt tgccgccctg caggcctcgg gctaccagcc tgacctttcc tacaacctgg
601 ctttggccta ttacagcagc cgacagtatg cttcagcact gaagcatatc gctgagatta
661 ttgagcgtgg catccgccag caccctgagc taggtgtggg catgaccact gagggcattg
721 atgttcgcag tgttggcaac accttagtcc tccatcagac tgctctggtg gaagccttca
781 accttaaggc agctatagaa taccaactga gaaactatga ggcagctcaa gaagccctca
841 ctgacatgcc acccagggca gaggaagagt tggaccctgt gaccctacac aaccaggcac
901 taatgaacat ggatgccagg cctacagaag ggtttgaaaa gctacagttt ttgctccaac
961 agaatccctt tcctccagag acttttggca acctgttgct gctctactgt aaatatgagt
1021 attttgacct ggcagcagat gtcctggcag aaaatgccca tttgatttat aagttcctca
1081 caccctatct ctatgacttc ttggacgctg tgatcacttg ccagacagct cctgaagagg
1141 ctttcattaa gcttgatggg ctagcaggga tgctgactga ggtcctccgg aaacttacca
1201 tacaagtaca ggaagcaaga cacaatagag atgatgaagc tatcaaaaag gcagtgaatg
1261 aatatgatga aaccatggag aaatacattc ctgtgttgat ggctcaggca aaaatctact
1321 ggaatcttga aaattatcca atggtggaaa agatcttccg caaatctgtg gaattctgta
1381 acgaccatga tgtgtggaag ttgaatgtgg ctcatgttct gttcatgcag gaaaacaaat
1441 acaaagaagc cattggtttc tatgaaccca tagtcaagaa gcattatgat aacatcctga
1501 atgtcagtgc tattgtactg gctaatctct gtgtttccta tattatgaca agtcaaaatg
1561 aagaagcaga ggagttgatg aggaagattg aaaaggagga agagcagctc tcttatgatg
1621 acccagataa gaaaatgtac catctctgca ttgtgaattt ggtgatagga actctttatt
1681 gtgccaaagg aaattatgac tttggtattt ctcgagttat caaaagcttg gaaccttaca
1741 acaaaaagct gggaacagac acctggtatt atgccaaaag atgcttcctg tccttgttag
1801 aaaacatgtc aaaacacaca atcatgcttc gtgatagtgt tattcaagaa tgtgtccagt
1861 ttctagaaca ctgtgaactt catggcagaa acatacctgc tgttattgaa caacccctgg
1921 aagaagaaag aatgcatgtt ggaaagaata cagtcacata tgagtctagg cagttaaaag
1981 ctttgattta tgagattata ggatggaata tatagtaata gctgatagtg gcatttatca
2041 aatggctttg ttatgtaaat ttgcatcgct ttatttaccc tttggcatct ttatatttgt
2101 tacatgttga actttgtaca cttatgcatt ataaaaaaaa aagtagctaa aaaaaaaaaa
2161 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa g
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