LOCUS BC033220 2231 bp mRNA linear HTC 19-NOV-2003 DEFINITION Homo sapiens breast carcinoma amplified sequence 3, mRNA (cDNA clone IMAGE:5018525), with apparent retained intron. ACCESSION BC033220 VERSION BC033220.1 KEYWORDS HTC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2231) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2231) AUTHORS Strausberg,R. TITLE Direct Submission JOURNAL Submitted (25-JUN-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Steven Jones, Jennifer Asano, Ian Bosdet, Yaron Butterfield, Susanna Chan, Readman Chiu, Chris Fjell, Erin Garland, Ran Guin, Letticia Hsiao, Martin Krzywinski, Reta Kutsche, Oliver Lee, Soo Sen Lee, Victor Ling, Carrie Mathewson, Candice McLeavy, Steven Ness, Pawan Pandoh, Anna-Liisa Prabhu, Parvaneh Saeedi, Jacqueline Schein, Duane Smailus, Michael Smith, Lorraine Spence, Jeff Stott, Michael Thorne, Miranada Tsai, Natasja van den Bosch, Jill Vardy, George Yang, Scott Zuyderduyn, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 43 Row: j Column: 24 This clone was selected for full length sequencing because it passed the following selection criteria: Hexamer frequency ORF analysis This clone has the following problem: retained intron. FEATURES Location/Qualifiers source 1..2231 /db_xref="H-InvDB:HIT000092987" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:5018525" /tissue_type="Pancreas, epithelioid carcinoma" /clone_lib="NIH_MGC_42" /lab_host="DH10B-R" /note="Vector: pOTB7" BASE COUNT 515 a 635 c 593 g 488 t ORIGIN 1 gaagagcaga acattaaaca gggtgttgtg aggattcatg gagcaaatgg ctgtgaaagc 61 accttgtaaa gggtagagca gtgtgcggcg tgagggatta ttatcattgt taagacgtct 121 acgcctcgtt gctcaccctg tgtgatcctg cagcttctca acttttccct cctttctccc 181 tggtttccac gcctgggctg ctgagtcagg cggaccggcc aaggctggcg agggctgaac 241 agatgctctg acatgtcaag ggaggaaatg acagttccca ggcagccctc tgtttcaggt 301 gtggaacagg ctccgaacac actttgtgtg ataaattcta gtaacgccag gctgagctct 361 acctccaccc ccttaggctg caagactagg acatgaggct gaaagtcaga gaagtccctg 421 tgagacgagg gccctgagca agcactggcc agactgtagc aaggccactc accaggccac 481 cccgctggtt ctacttccgc acccacctct ggcagccatg atgcttctgc agcatgccag 541 tttgttcact gagaccttca cagaaggtcg cacaaccacc ctggacggtg agaaactaag 601 gtgactgagg caagtcattg aaccaccctg agccttggct tcctcatcta tgaaatggag 661 ttgacagcat ctgtcctgcc tgtggtaaaa attgctgtga tcccacaacc aaaaggaaag 721 agagaattat gagaaaaata tgtacttatt ctgtgaaaat atgtgagatt ttcatgagag 781 acttcctgtt ccagtggact cttccaccgc ccttgagtgg ggaacatcca ggccttcaca 841 ctcacgctca gcccatcacc cctctgtgca aggtgcaagg tcctctgccc acctgaagcc 901 tcaaggcctg atggaaacca tccacagcca ctctagtacc tttgacagga gcgtgaccct 961 gctggaggtg tgcgggagct ggcctgaggg cttcgggctg cggcacatgt cctccatgga 1021 gcacacggag gagggcctcc gggagcgact tgccgacgcc atggccgagt cacctagccg 1081 ggacgtcgtg ggatccggaa caggcacagt gattcctatc aacaaggagg aagtgccagt 1141 gcgacctctg tgacccttca gagtcccctc tccaggtgct gccccaacat gaaagcagga 1201 attactgtgg aaaggcacag gcttggactg aggggctggg ggagggctgt tggaccccca 1261 gagccaggct ctcctctgga agcatcaaca tagacacagc ccttgacgta gcagtaaaaa 1321 ccttcccccc tgagagacac gtggcagtga agtgttttga acttcagcga gagggaagca 1381 tcgagactct gagtaacagc tcaggctcca ccagcggcag cataccaaga aactttgatg 1441 gctaccgatc tccgctgccc accaatgaga gccagcccct cagcctcttc ccgactggct 1501 tcccgtaggt accagcaacc tgcttctgac tggccagccc cctcccctgc tggaggaggg 1561 gagaagcccc gctctggtcc tacccttcag tctctgctct tccttcatca accaccttcc 1621 ccaagcttag tgacagcagc cgcccatcct acctggatgg agaagagacc cttctccaag 1681 cacctcagcg cacttgccct ctgccacacc tgtcggtgga ggctgtggcc aggagagact 1741 gtagaagctc ggtccctgtg tatgtttgca tatgacatcc tgcattggat ccgcttttgt 1801 attttttaac catacccacg gtggggcggg tggggggagc ctggaacagt gaccagatct 1861 gggggcctga gtggggacag agttgatcgt ccacctggcc attttgaccc tgagtggaca 1921 gtcacagcct cagctcatgt ctggctgtga cacacactgc ccccagcttc ccttggtcag 1981 ccccactcca gcacggggtg aacggaggcc cagagtacta gggaaggagg aagggaggac 2041 atgcctcttc ttcctccttt ctttccccat ctgttcctgg gaagagtttg tctttcttat 2101 ctttaagccc ctttaccctg gtcctgtact gatcagtgaa ggaaaccgtg gttactgagg 2161 ccctgttgaa aagtgcacgt cttgtccaat aaatcacgct gcagttggtg tccaaaaaaa 2221 aaaaaaaaaa a //